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Aliases for C6orf136 Gene

Aliases for C6orf136 Gene

  • Chromosome 6 Open Reading Frame 136 2 3

External Ids for C6orf136 Gene

Previous GeneCards Identifiers for C6orf136 Gene

  • GC06P030385
  • GC06P030721
  • GC06P030722
  • GC06P030614
  • GC06P030414

Summaries for C6orf136 Gene

GeneCards Summary for C6orf136 Gene

C6orf136 (Chromosome 6 Open Reading Frame 136) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf136 Gene

Genomics for C6orf136 Gene

Regulatory Elements for C6orf136 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C6orf136 Gene

Start:
30,647,039 bp from pter
End:
30,653,210 bp from pter
Size:
6,172 bases
Orientation:
Plus strand

Genomic View for C6orf136 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf136 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for C6orf136 Gene

  • Protein details for C6orf136 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SQH8-CF136_HUMAN
    Recommended name:
    Uncharacterized protein C6orf136
    Protein Accession:
    Q5SQH8
    Secondary Accessions:
    • A9R9P9
    • F8VX15
    • Q5SU01
    • Q6ZSB7
    • Q8TB84

    Protein attributes for C6orf136 Gene

    Size:
    315 amino acids
    Molecular mass:
    35794 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI17760.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI41881.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI95540.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI95541.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for C6orf136 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C6orf136 Gene

Proteomics data for C6orf136 Gene at MOPED

Post-translational modifications for C6orf136 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C6orf136 Gene

Domains for C6orf136 Gene

Protein Domains for C6orf136 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf136: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf136 Gene

Function for C6orf136 Gene

Phenotypes for C6orf136 Gene

GenomeRNAi human phenotypes for C6orf136:
genes like me logo Genes that share phenotypes with C6orf136: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C6orf136 Gene

Localization for C6orf136 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf136 Gene COMPARTMENTS Subcellular localization image for C6orf136 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 1

Gene Ontology (GO) - Cellular Components for C6orf136 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with C6orf136: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C6orf136 Gene

Pathways for C6orf136 Gene

SuperPathways for C6orf136 Gene

No Data Available

Interacting Proteins for C6orf136 Gene

Selected Interacting proteins: Q5SQH8-CF136_HUMAN for C6orf136 Gene via MINT I2D

Gene Ontology (GO) - Biological Process for C6orf136 Gene

None

No data available for Pathways by source for C6orf136 Gene

Transcripts for C6orf136 Gene

Unigene Clusters for C6orf136 Gene

Chromosome 6 open reading frame 136:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C6orf136

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C6orf136

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf136 Gene

No ASD Table

Relevant External Links for C6orf136 Gene

GeneLoc Exon Structure for
C6orf136
ECgene alternative splicing isoforms for
C6orf136

Expression for C6orf136 Gene

mRNA expression in normal human tissues for C6orf136 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C6orf136 Gene

SOURCE GeneReport for Unigene cluster for C6orf136 Gene Hs.591787

genes like me logo Genes that share expressions with C6orf136: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C6orf136 Gene

Orthologs for C6orf136 Gene

This gene was present in the common ancestor of animals.

Orthologs for C6orf136 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf136 35
  • 99.37 (n)
  • 100 (a)
C6orf136 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C23H6orf136 35
  • 88.64 (n)
  • 89.17 (a)
C6orf136 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C12H6orf136 35
  • 89.1 (n)
  • 88.78 (a)
C6orf136 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2310061I04Rik 35
  • 83.23 (n)
  • 79.94 (a)
2310061I04Rik 16
2310061I04Rik 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf136 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C6orf136 36
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1302996 35
  • 81.83 (n)
  • 78.71 (a)
lizard
(Anolis carolinensis)
Reptilia C6orf136 36
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf136 35
  • 50.72 (n)
  • 47.84 (a)
zebrafish
(Danio rerio)
Actinopterygii C19H6orf136 36
  • 27 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG16787 36
  • 26 (a)
OneToOne
Species with no ortholog for C6orf136:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf136 Gene

ENSEMBL:
Gene Tree for C6orf136 (if available)
TreeFam:
Gene Tree for C6orf136 (if available)

Paralogs for C6orf136 Gene

No data available for Paralogs for C6orf136 Gene

Variants for C6orf136 Gene

Sequence variations from dbSNP and Humsavar for C6orf136 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs3132593 -- 30,650,339(-) agata(C/T)ctcct intron-variant
rs3132594 -- 30,647,483(-) CGGCA(A/G)CGCCT intron-variant, reference, synonymous-codon
rs5875269 -- 30,652,240(+) CCTGT(-/CACACACA)CACAC intron-variant
rs6899862 -- 30,652,107(+) gtgtg(C/G)tggta intron-variant
rs6900113 -- 30,652,455(+) aggat(C/T)gttaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf136 Gene

Variant ID Type Subtype PubMed ID
esv2731791 CNV Deletion 23290073
nsv884086 CNV Gain 21882294
esv2670269 CNV Deletion 23128226
nsv830626 CNV Loss 17160897
dgv6526n71 CNV Loss 21882294

Relevant External Links for C6orf136 Gene

HapMap Linkage Disequilibrium report
C6orf136

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf136 Gene

Disorders for C6orf136 Gene

No disorders were found for C6orf136 Gene.

No data available for UniProtKB/Swiss-Prot for C6orf136 Gene

Publications for C6orf136 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C6orf136 Gene

Sources for C6orf136 Gene

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