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Aliases for C6orf132 Gene

Aliases for C6orf132 Gene

  • Chromosome 6 Open Reading Frame 132 2 3
  • Uncharacterized Protein C6orf132 3
  • BA7K24.2 3

External Ids for C6orf132 Gene

Summaries for C6orf132 Gene

GeneCards Summary for C6orf132 Gene

C6orf132 (Chromosome 6 Open Reading Frame 132) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf132 Gene

Genomics for C6orf132 Gene

Genomic Location for C6orf132 Gene

Start:
42,101,118 bp from pter
End:
42,142,977 bp from pter
Size:
41,860 bases
Orientation:
Minus strand

Genomic View for C6orf132 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf132 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf132 Gene

Regulatory Elements for C6orf132 Gene

Proteins for C6orf132 Gene

  • Protein details for C6orf132 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0Z8-CF132_HUMAN
    Recommended name:
    Uncharacterized protein C6orf132
    Protein Accession:
    Q5T0Z8
    Secondary Accessions:
    • A6NI05

    Protein attributes for C6orf132 Gene

    Size:
    1188 amino acids
    Molecular mass:
    124034 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BE791477; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; Sequence=BU857282; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305}; Sequence=BU857282; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the C-terminal part.; Evidence={ECO:0000305}; Sequence=CAI16783.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI19541.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for C6orf132 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C6orf132 Gene

Proteomics data for C6orf132 Gene at MOPED

Post-translational modifications for C6orf132 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf132 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf132 Gene

Domains for C6orf132 Gene

Protein Domains for C6orf132 Gene

ProtoNet:
genes like me logo Genes that share domains with C6orf132: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf132 Gene

Function for C6orf132 Gene

Phenotypes for C6orf132 Gene

genes like me logo Genes that share phenotypes with C6orf132: view

miRNA for C6orf132 Gene

miRTarBase miRNAs that target C6orf132

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C6orf132 Gene

Localization for C6orf132 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf132 Gene COMPARTMENTS Subcellular localization image for C6orf132 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1
golgi apparatus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for C6orf132 Gene

Pathways for C6orf132 Gene

SuperPathways for C6orf132 Gene

No Data Available

Interacting Proteins for C6orf132 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000341368%0d%0a9606.ENSP00000216492%0d%0a9606.ENSP00000441929%0d%0a9606.ENSP00000341551%0d%0a
Selected Interacting proteins: ENSP00000341368 for C6orf132 Gene via STRING

Gene Ontology (GO) - Biological Process for C6orf132 Gene

None

No data available for Pathways by source for C6orf132 Gene

Transcripts for C6orf132 Gene

mRNA/cDNA for C6orf132 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C6orf132 Gene

Chromosome 6 open reading frame 132:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf132 Gene

No ASD Table

Relevant External Links for C6orf132 Gene

GeneLoc Exon Structure for
C6orf132
ECgene alternative splicing isoforms for
C6orf132

Expression for C6orf132 Gene

mRNA expression in normal human tissues for C6orf132 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C6orf132 Gene

This gene is overexpressed in Esophagus - Mucosa (13.8), Skin - Sun Exposed (Lower leg) (6.3), Skin - Not Sun Exposed (Suprapubic) (6.0), and Vagina (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C6orf132 Gene

SOURCE GeneReport for Unigene cluster for C6orf132 Gene Hs.444277

genes like me logo Genes that share expressions with C6orf132: view

Orthologs for C6orf132 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf132 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf132 36
  • 98.89 (n)
  • 97.69 (a)
C6orf132 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C6orf132 37
  • 57 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C6orf132 37
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AI661453 16
AI661453 37
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf132 37
  • 26 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C6orf132 37
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves C6orf132 37
  • 34 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C6orf132 37
  • 47 (a)
OneToOne
Species with no ortholog for C6orf132:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf132 Gene

ENSEMBL:
Gene Tree for C6orf132 (if available)
TreeFam:
Gene Tree for C6orf132 (if available)

Paralogs for C6orf132 Gene

No data available for Paralogs for C6orf132 Gene

Variants for C6orf132 Gene

Sequence variations from dbSNP and Humsavar for C6orf132 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs2244418 -- 42,140,271(+) ACCAG(A/G)CCCTC intron-variant
rs2474347 -- 42,140,203(-) AAGGA(C/T)AGCTC intron-variant
rs2474348 -- 42,137,185(-) ACCAG(C/G)CTCTG intron-variant
rs2492942 -- 42,140,077(+) CCAGG(G/T)AACAC intron-variant
rs3749918 -- 42,142,490(+) TCCCT(A/C)GCCCT utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for C6orf132 Gene

Variant ID Type Subtype PubMed ID
nsv830649 CNV Loss 17160897
dgv753n27 CNV Loss 19166990
nsv885835 CNV Loss 21882294
esv2658537 CNV Deletion 23128226

Relevant External Links for C6orf132 Gene

HapMap Linkage Disequilibrium report
C6orf132

Disorders for C6orf132 Gene

No disorders were found for C6orf132 Gene.

No data available for UniProtKB/Swiss-Prot for C6orf132 Gene

Publications for C6orf132 Gene

  1. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. (PMID: 24529757) Xie T. … Xu R. (Neurobiol. Aging 2014) 3
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

Products for C6orf132 Gene

Sources for C6orf132 Gene

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