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C6orf106 Gene

protein-coding   GIFtS: 50
GCID: GC06M035732

Chromosome 6 Open Reading Frame 106

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Chromosome 6 Open Reading Frame 1061 2
FP8522
dJ391O22.42
Uncharacterized Protein C6orf1062

External Ids:    HGNC: 212151   Entrez Gene: 647712   Ensembl: ENSG000001968217   OMIM: 6122175   UniProtKB: Q9H6K13   

Export aliases for C6orf106 gene to outside databases

Previous GC identifers: GC06M034601 GC06M034663 GC06M034278 GC06M034689 GC06M034899 GC06M035237


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C6orf106 Gene:
C6orf106 (chromosome 6 open reading frame 106) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000006.11  NT_007592.16  NC_018917.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C6orf106 gene promoter:
         Max1   p53   ATF-2   HNF-4alpha2   STAT5A   C/EBPalpha   HNF-4alpha1   CREB   CRE-BP1   NF-kappaB1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for C6orf106

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C6orf106


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.31   Ensembl cytogenetic band:  6p21.31   HGNC cytogenetic band: 6p21.31

C6orf106 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C6orf106 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M035732:  view genomic region     (about GC identifiers)

Start:
34,555,065 bp from pter      End:
34,664,636 bp from pter
Size:
109,572 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CF106_HUMAN, Q9H6K1 (See protein sequence)
Recommended Name: Uncharacterized protein C6orf106  
Size: 298 amino acids; 32872 Da
Secondary accessions: B2R8K7 Q5VV77 Q96MG5 Q9BUR9
Alternative splicing: 2 isoforms:  Q9H6K1-1   Q9H6K1-2   

Explore the universe of human proteins at neXtProt for C6orf106: NX_Q9H6K1

Explore proteomics data for C6orf106 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys205, Lys218, Lys228, Lys240, Lys287
  • Modification sites at PhosphoSitePlus

  • See C6orf106 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_073595.2  NP_077270.1  

    ENSEMBL proteins: 
     ENSP00000363135   ENSP00000363138   ENSP00000363133  

    C6orf106 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for C6orf106

     
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    antibodies-online proteins for C6orf106 (2 products) 

     
    antibodies-online peptides for C6orf106

    C6orf106 Antibody Products:

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    antibodies-online antibodies for C6orf106 (15 products) 

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    antibodies-online kits for C6orf106 (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR009060 UBA-like

    Graphical View of Domain Structure for InterPro Entry Q9H6K1

    ProtoNet protein and cluster: Q9H6K1


    Find genes that share domains with C6orf106           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0005515protein binding ----
         
    Find genes that share ontologies with C6orf106           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for C6orf106

    miRNA
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    miRTarBase miRNAs that target C6orf106:
    hsa-mir-484 (MIRT041868), hsa-mir-423-3p (MIRT042543), hsa-mir-10b-5p (MIRT047483)

    Block miRNA regulation of human, mouse, rat C6orf106 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate C6orf106 (see all 72):
    hsa-miR-579 hsa-miR-3152-3p hsa-miR-188-5p hsa-miR-4272 hsa-miR-485-3p hsa-miR-578 hsa-miR-3916 hsa-miR-877*
    SwitchGear 3'UTR luciferase reporter plasmidC6orf106 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol1
    extracellular1
    golgi apparatus1
    nucleus1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    Find genes that share ontologies with C6orf106           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C6orf106
    Interactions:

        Search GeneGlobe Interaction Network for C6orf106

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for C6orf106 (Q9H6K13 ENSP000003631354) via UniProtKB, MINT, STRING, and/or I2D (see all 11)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    APPBP2Q926243I2D: score=5 
    LDB3O751123I2D: score=2 
    UBCENSP000003448184STRING: ENSP00000344818
    TXN2ENSP000002161854STRING: ENSP00000216185
    NME1ENSP000000130344STRING: ENSP00000013034
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with C6orf106           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C6orf106 (CF106)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for C6orf106 gene (2 alternative transcripts): 
    NM_022758.5  NM_024294.3  

    Unigene Cluster for C6orf106:

    Chromosome 6 open reading frame 106
    Hs.643498  [show with all ESTs]
    Unigene Representative Sequence: NM_024294
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000374023(uc003ojr.2) ENST00000374026(uc003ojs.2) ENST00000374021

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate C6orf106 (see all 72):
    hsa-miR-579 hsa-miR-3152-3p hsa-miR-188-5p hsa-miR-4272 hsa-miR-485-3p hsa-miR-578 hsa-miR-3916 hsa-miR-877*
    SwitchGear 3'UTR luciferase reporter plasmidC6orf106 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat C6orf106
      QuantiFast Probe-based Assays in human, mouse, rat C6orf106

    Additional mRNA sequence: 

    AF052106.1 AF370387.1 AK025848.1 AK056964.1 AK313410.1 BC002328.1 BC010143.2 BC010184.1 
    BC013241.1 BC071885.1 BC075810.1 BC107732.1 

    20 DOTS entries:

    DT.95263974  DT.101954771  DT.97790845  DT.121358688  DT.95341998  DT.315335  DT.100793717  DT.121358621 
    DT.121359021  DT.95341996  DT.121358984  DT.95263976  DT.92448842  DT.97825516  DT.121358609  DT.121358612 
    DT.121358670  DT.40132725  DT.40274976  DT.97835143 

    Selected AceView cDNA sequences (see all 401):

    BI910503 AW673200 BX509347 CD251885 AW204409 CR593696 CD367851 BQ921645 
    AW264235 BQ129348 BE301214 BQ220289 AA588214 BQ889658 BC010143 BU615658 
    BM719287 BU183931 BU176643 BE463888 AI652244 AI360295 BM928767 CD673256 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for C6orf106 (see all 6)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8
    SP1:              -           -                       -         
    SP2:                          -                                 
    SP3:              -                                             
    SP4:              -           -     -                           
    SP5:                          -     -                 -         


    ECgene alternative splicing isoforms for C6orf106

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    C6orf106 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGCCTAGGA
    C6orf106 Expression
    About this image

    C6orf106 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C6orf106 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.643498
        Custom PCR Arrays for C6orf106
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C6orf106

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for C6orf106 gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia D17Wsu92e1 , 5 DNA segment, Chr 17, Wayne State University 92, expressed1, 5 94.39(n)1
    97.25(a)1
      17 (14.59 cM)5
    2246471  NM_001033279.31  NP_001028451.21 
     277512325 
    chicken
    (Gallus gallus)
    Aves C26H6ORF1061 chromosome 26 open reading frame, human C6orf106 86.71(n)
    93.81(a)
      419902  NM_001030919.1  NP_001026090.1 
    lizard
    (Anolis carolinensis)
    Reptilia C6orf1066
    chromosome 6 open reading frame 106
    94(a)
    1 ↔ 1
    4(121169039-121215689)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia c6orf1061 chromosome 6 open reading frame 106 72.9(n)
    80.94(a)
      100101690  NM_001126074.1  NP_001119546.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1015771 zgc:101577 76.6(n)
    81.56(a)
      541415  NM_001013542.1  NP_001013560.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG54456
    --
    20(a)
    1 ↔ 1
    X(17196509-17199511)
    worm
    (Caenorhabditis elegans)
    Secernentea C36E6.26
    Protein C36E6.2 (C36E6.2) mRNA, complete cds
    26(a)
    1 ↔ 1
    X(17452392-17455856) WBGene00016490


    ENSEMBL Gene Tree for C6orf106 (if available)
    TreeFam Gene Tree for C6orf106 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for C6orf106 gene

    Find genes that share paralogs with C6orf106           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for C6orf106
    PGOHUM00000240829


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for C6orf106 (see all 2291)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs106181631,2
    C--34534863(+) ttttt-/T/TTTT
            
    gagat
    2 -- int11NA 2
    rs1895537911,2
    --34554845(+) CTTACA/CTTCCT 2 -- int10--------
    rs1807414261,2
    --34554852(+) TCCTGC/GTCACT 2 -- int10--------
    rs1473678661,2
    --34554906(+) AATTTC/TCCAAA 2 -- int10--------
    rs22743471,2
    C,F,H--34554983(-) TGTGAT/CGTGTA 2 -- int14Minor allele frequency- C:0.01NS EA 410
    rs1865966071,2
    --34555114(+) ATACAA/GTAAGG 2 -- ut310--------
    rs10463181,2
    A,H--34555344(-) TCAATC/TTGAGC 2 -- ut31 ese36Minor allele frequency- T:0.00MN NS EA NA 604
    rs759545981,2
    C,F--34555389(+) CACCAT/CGGCCA 2 -- ut311Minor allele frequency- C:0.03EA 120
    rs1900646171,2
    --34555392(+) CATGGC/GCACCC 2 -- ut310--------
    rs117520241,2
    H--34555397(+) CCACCC/TTCAGG 2 -- ut31 ese30--------

    HapMap Linkage Disequilibrium report for C6orf106 (34555065 - 34664636 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for C6orf106 (see all 13):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv988873CNV Deletion20482838
    esv2665867CNV Deletion23128226
    esv1078185CNV Insertion17803354
    nsv7888CNV Loss18304495
    nsv516578CNV Loss19592680
    nsv5255CNV Loss18451855
    nsv830640CNV Loss17160897
    nsv818410CNV Gain17921354
    nsv823667CNV Gain20364138
    dgv6831n71CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing C6orf106
    DNA2.0 Custom Variant and Variant Library Synthesis for C6orf106

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 612217    OMIM disorders: --


    Find genes that share disorders with C6orf106           About GenesLikeMe

    Genetic Association Database (GAD): C6orf106
    Human Genome Epidemiology (HuGE) Navigator: C6orf106 (3 documents)

    Export disorders for C6orf106 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C6orf106 gene, integrated from 10 sources (see all 34):
    (articles sorted by number of sources associating them with C6orf106)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. (PubMed id 19343178)1, 4 Soranzo N....Deloukas P. (PLoS Genet. 2009)
    2. Genome-wide association analysis identifies 20 loci that influence adult height. (PubMed id 18391952)1, 4 Weedon M.N....Frayling T.M. (Nat. Genet. 2008)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (Nature 2003)
    6. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PubMed id 23563607)1 Berndt S.I....Ingelsson E. (Nat. Genet. 2013)
    7. The F-box protein FBXO25 promotes the proteasome-dependent degradation of ELK-1 protein. (PubMed id 23940030)1 Teixeira F.R....Gomes M.D. (J. Biol. Chem. 2013)
    8. Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity. (PubMed id 23449627)1 Cousminer D.L....WidAcn E. (Hum. Mol. Genet. 2013)
    9. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    10. Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (J. Proteome Res. 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 64771 HGNC: 21215 AceView: C6orf106 Ensembl:ENSG00000196821 euGenes: HUgn64771
    ECgene: C6orf106 H-InvDB: C6orf106

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C6orf106 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for C6orf106 gene:
    Search GeneIP for patents involving C6orf106

    GeneCards and IP:
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