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Aliases for C6orf106 Gene

Aliases for C6orf106 Gene

  • Chromosome 6 Open Reading Frame 106 2 3
  • Uncharacterized Protein C6orf106 3
  • DJ391O22.4 3
  • FP852 3

External Ids for C6orf106 Gene

Summaries for C6orf106 Gene

GeneCards Summary for C6orf106 Gene

C6orf106 (Chromosome 6 Open Reading Frame 106) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf106 Gene

Genomics for C6orf106 Gene

Genomic Location for C6orf106 Gene

Start:
34,587,280 bp from pter
End:
34,696,859 bp from pter
Size:
109,580 bases
Orientation:
Minus strand

Genomic View for C6orf106 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf106 Gene

Regulatory Elements for C6orf106 Gene

Proteins for C6orf106 Gene

  • Protein details for C6orf106 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H6K1-CF106_HUMAN
    Recommended name:
    Uncharacterized protein C6orf106
    Protein Accession:
    Q9H6K1
    Secondary Accessions:
    • B2R8K7
    • Q5VV77
    • Q96MG5
    • Q9BUR9

    Protein attributes for C6orf106 Gene

    Size:
    298 amino acids
    Molecular mass:
    32872 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf106 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C6orf106 Gene

Proteomics data for C6orf106 Gene at MOPED

Post-translational modifications for C6orf106 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys205, Lys218, Lys228, Lys240, and Lys287

Other Protein References for C6orf106 Gene

No data available for DME Specific Peptides for C6orf106 Gene

Domains for C6orf106 Gene

Protein Domains for C6orf106 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C6orf106: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf106 Gene

Function for C6orf106 Gene

Gene Ontology (GO) - Molecular Function for C6orf106 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
GO:0043130 ubiquitin binding IBA --
genes like me logo Genes that share ontologies with C6orf106: view

miRNA for C6orf106 Gene

miRTarBase miRNAs that target C6orf106

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C6orf106 Gene

Localization for C6orf106 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf106 Gene COMPARTMENTS Subcellular localization image for C6orf106 gene
Compartment Confidence
cytosol 1
extracellular 1
golgi apparatus 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C6orf106 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000407 pre-autophagosomal structure IBA --
GO:0005575 cellular_component ND --
GO:0005776 autophagic vacuole IBA --
genes like me logo Genes that share ontologies with C6orf106: view

Pathways for C6orf106 Gene

SuperPathways for C6orf106 Gene

No Data Available

Interacting Proteins for C6orf106 Gene

Gene Ontology (GO) - Biological Process for C6orf106 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0016236 macroautophagy IBA --
genes like me logo Genes that share ontologies with C6orf106: view

No data available for Pathways by source for C6orf106 Gene

Transcripts for C6orf106 Gene

Unigene Clusters for C6orf106 Gene

Chromosome 6 open reading frame 106:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf106 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8
SP1: - - -
SP2: -
SP3: -
SP4: - - -
SP5: - - -
SP6:

Relevant External Links for C6orf106 Gene

GeneLoc Exon Structure for
C6orf106
ECgene alternative splicing isoforms for
C6orf106

Expression for C6orf106 Gene

mRNA expression in normal human tissues for C6orf106 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf106 Gene

This gene is overexpressed in Muscle - Skeletal (4.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C6orf106 Gene

SOURCE GeneReport for Unigene cluster for C6orf106 Gene Hs.643498

genes like me logo Genes that share expressions with C6orf106: view

Orthologs for C6orf106 Gene

This gene was present in the common ancestor of animals.

Orthologs for C6orf106 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6ORF106 37
  • 100 (a)
OneToOne
LOC463186 36
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C6ORF106 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C12H6orf106 36
  • 97.02 (n)
  • 98.97 (a)
C6orf106 37
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia D17Wsu92e 36
  • 94.39 (n)
  • 97.25 (a)
D17Wsu92e 16
D17Wsu92e 37
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf106 37
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C6orf106 37
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves C26H6ORF106 36
  • 86.71 (n)
  • 93.81 (a)
C26H6ORF106 37
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C6orf106 37
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf106 36
  • 72.9 (n)
  • 80.94 (a)
zebrafish
(Danio rerio)
Actinopterygii C6H6orf106 37
  • 81 (a)
OneToOne
zgc:101577 36
  • 76.6 (n)
  • 81.56 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000469 36
  • 50.89 (n)
  • 40.43 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5445 37
  • 20 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C36E6.2 37
  • 26 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5611 37
  • 35 (a)
OneToOne
Species with no ortholog for C6orf106:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C6orf106 Gene

ENSEMBL:
Gene Tree for C6orf106 (if available)
TreeFam:
Gene Tree for C6orf106 (if available)

Paralogs for C6orf106 Gene

Pseudogenes.org Pseudogenes for C6orf106 Gene

genes like me logo Genes that share paralogs with C6orf106: view

No data available for Paralogs for C6orf106 Gene

Variants for C6orf106 Gene

Sequence variations from dbSNP and Humsavar for C6orf106 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs205258 -- 34,596,466(-) GCATG(A/G)TGGTG intron-variant
rs205259 -- 34,596,289(-) CAGAG(C/T)GAGAC intron-variant
rs205260 -- 34,596,181(-) AGGGC(A/C/G)CTGGT intron-variant
rs205261 -- 34,596,110(-) TATTT(C/G)TAGTT intron-variant
rs205262 -- 34,595,387(-) TGGAA(C/T)GATTG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C6orf106 Gene

Variant ID Type Subtype PubMed ID
dgv1938e1 CNV Complex 17122850
dgv6831n71 CNV Gain 21882294
nsv516578 CNV Loss 19592680
nsv885792 CNV Gain 21882294
nsv823667 CNV Gain 20364138
nsv818410 CNV Gain 17921354
nsv830640 CNV Loss 17160897
esv988873 CNV Deletion 20482838
nsv885794 CNV Gain 21882294
nsv7888 CNV Loss 18304495
esv2665867 CNV Deletion 23128226
esv1078185 CNV Insertion 17803354
nsv5255 CNV Loss 18451855

Relevant External Links for C6orf106 Gene

HapMap Linkage Disequilibrium report
C6orf106

Disorders for C6orf106 Gene

Relevant External Links for C6orf106

Genetic Association Database (GAD)
C6orf106
Human Genome Epidemiology (HuGE) Navigator
C6orf106
genes like me logo Genes that share disorders with C6orf106: view

No data available for UniProtKB/Swiss-Prot for C6orf106 Gene

Publications for C6orf106 Gene

  1. Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. (PMID: 19343178) Soranzo N. … Deloukas P. (PLoS Genet. 2009) 3 49
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Genome-wide association analysis identifies 20 loci that influence adult height. (PMID: 18391952) Weedon M.N. … Frayling T.M. (Nat. Genet. 2008) 3 49

Products for C6orf106 Gene

Sources for C6orf106 Gene

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