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Aliases for C6orf10 Gene

Aliases for C6orf10 Gene

  • Chromosome 6 Open Reading Frame 10 2 3
  • Testis Specific Basic Protein 2 3
  • Uncharacterized Protein C6orf10 3
  • C6orf106 6
  • TSBP 3

External Ids for C6orf10 Gene

Previous GeneCards Identifiers for C6orf10 Gene

  • GC06M032287
  • GC06M032031
  • GC06M032332
  • GC06M032368

Summaries for C6orf10 Gene

GeneCards Summary for C6orf10 Gene

C6orf10 (Chromosome 6 Open Reading Frame 10) is a Protein Coding gene.

Gene Wiki entry for C6orf10 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf10 Gene

Genomics for C6orf10 Gene

Regulatory Elements for C6orf10 Gene

Genomic Location for C6orf10 Gene

32,288,526 bp from pter
32,371,929 bp from pter
83,404 bases
Minus strand

Genomic View for C6orf10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for C6orf10 Gene

  • Protein details for C6orf10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C6orf10
    Protein Accession:
    Secondary Accessions:
    • A2BET1
    • A2BET2
    • A6NME2
    • B0S7R2
    • B0S7R3
    • E9PMB1
    • Q5SPI9
    • Q5SPJ0
    • Q5SPK9
    • Q5SPL0
    • Q5SRN3
    • Q5TG25
    • Q5TG26
    • Q8N4B6

    Protein attributes for C6orf10 Gene

    563 amino acids
    Molecular mass:
    61626 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf10 Gene


neXtProt entry for C6orf10 Gene

Proteomics data for C6orf10 Gene at MOPED

Post-translational modifications for C6orf10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C6orf10 Gene

Domains for C6orf10 Gene

Protein Domains for C6orf10 Gene


Suggested Antigen Peptide Sequences for C6orf10 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf10: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf10 Gene

Function for C6orf10 Gene

Animal Model Products

CRISPR Products

miRNA for C6orf10 Gene

miRTarBase miRNAs that target C6orf10

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C6orf10

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for C6orf10 Gene

Localization for C6orf10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C6orf10 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for C6orf10 Gene COMPARTMENTS Subcellular localization image for C6orf10 gene
Compartment Confidence
extracellular 2

Gene Ontology (GO) - Cellular Components for C6orf10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C6orf10: view

Pathways for C6orf10 Gene

SuperPathways for C6orf10 Gene

No Data Available

Interacting Proteins for C6orf10 Gene

Gene Ontology (GO) - Biological Process for C6orf10 Gene


No data available for Pathways by source for C6orf10 Gene

Transcripts for C6orf10 Gene

mRNA/cDNA for C6orf10 Gene

Unigene Clusters for C6orf10 Gene

Chromosome 6 open reading frame 10:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C6orf10

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf10 Gene

No ASD Table

Relevant External Links for C6orf10 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C6orf10 Gene

mRNA expression in normal human tissues for C6orf10 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf10 Gene

This gene is overexpressed in Testis (51.8).

Protein differential expression in normal tissues for C6orf10 Gene

This gene is overexpressed in Pancreas (68.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C6orf10 Gene

SOURCE GeneReport for Unigene cluster for C6orf10 Gene Hs.567414

genes like me logo Genes that share expressions with C6orf10: view

Expression partners for C6orf10 Gene

* - Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C6orf10 Gene

Orthologs for C6orf10 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C6orf10 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C6H6orf10 35
  • 89.46 (n)
  • 85.71 (a)
C6orf10 36
  • 97 (a)
(Mus musculus)
Mammalia 17 16
(Bos Taurus)
Mammalia C6orf10 36
  • 47 (a)
(Canis familiaris)
Mammalia C6orf10 36
  • 40 (a)
Species with no ortholog for C6orf10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf10 Gene

Gene Tree for C6orf10 (if available)
Gene Tree for C6orf10 (if available)

Paralogs for C6orf10 Gene

No data available for Paralogs for C6orf10 Gene

Variants for C6orf10 Gene

Sequence variations from dbSNP and Humsavar for C6orf10 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs369693 -- 32,242,554(-) AGGAA(A/G)GAAGG intron-variant
rs370062 -- 32,242,442(-) AAGAA(A/G)GAAAG intron-variant
rs371156 -- 32,242,186(-) TGAAC(A/G)GTTCC intron-variant
rs380571 -- 32,241,785(-) ACACA(A/G)GAGTT downstream-variant-500B
rs380911 -- 32,241,674(-) CCAAC(A/C)TAACA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C6orf10 Gene

Variant ID Type Subtype PubMed ID
dgv6646n71 CNV Loss 21882294
dgv6647n71 CNV Loss 21882294
dgv6648n71 CNV Gain+Loss 21882294
nsv884724 CNV Loss 21882294
dgv6649n71 CNV Loss 21882294
esv275065 CNV Loss 21479260
dgv6650n71 CNV Gain 21882294
esv2731826 CNV Deletion 23290073
nsv830630 CNV Loss 17160897
nsv884731 CNV Loss 21882294
dgv6651n71 CNV Loss 21882294
esv2569081 CNV Deletion 19546169
esv2351738 CNV Deletion 18987734
esv3397 CNV Deletion 18987735
esv2731827 CNV Deletion 23290073
esv7532 CNV Loss 19470904
esv1081136 CNV Deletion 17803354
esv9046 CNV Loss 19470904
esv2731828 CNV Deletion 23290073
dgv6652n71 CNV Gain+Loss 21882294

Relevant External Links for C6orf10 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf10 Gene

Disorders for C6orf10 Gene

Relevant External Links for C6orf10

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for C6orf10 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C6orf10 Gene

Publications for C6orf10 Gene

  1. BTL-II: a polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse. (PMID: 10803852) Stammers M. … Beck S. (Immunogenetics 2000) 2 3 23
  2. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl E.A. … Plenge R.M. (Nat. Genet. 2010) 3 48
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Multiple genetic loci for bone mineral density and fractures. (PMID: 18445777) Styrkarsdottir U. … Stefansson K. (N. Engl. J. Med. 2008) 3 48

Products for C6orf10 Gene

Sources for C6orf10 Gene

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