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Aliases for C6orf1 Gene

Aliases for C6orf1 Gene

  • Chromosome 6 Open Reading Frame 1 2 3
  • LBH 3 4 6
  • Uncharacterized Protein C6orf1 3
  • Protein LBH 4

External Ids for C6orf1 Gene

Previous GeneCards Identifiers for C6orf1 Gene

  • GC06U990175
  • GC06M034323
  • GC06M034214
  • GC06M033936

Summaries for C6orf1 Gene

GeneCards Summary for C6orf1 Gene

C6orf1 (Chromosome 6 Open Reading Frame 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf1 Gene

Genomics for C6orf1 Gene

Regulatory Elements for C6orf1 Gene

Transcription factor binding sites by QIAGEN in the C6orf1 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C6orf1 Gene

Start:
34,246,380 bp from pter
End:
34,249,470 bp from pter
Size:
3,091 bases
Orientation:
Minus strand

Genomic View for C6orf1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf1 Gene

Proteins for C6orf1 Gene

  • Protein details for C6orf1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86T20-CF001_HUMAN
    Recommended name:
    Uncharacterized protein C6orf1
    Protein Accession:
    Q86T20
    Secondary Accessions:
    • A8K299

    Protein attributes for C6orf1 Gene

    Size:
    159 amino acids
    Molecular mass:
    17113 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf1 Gene

Proteomics data for C6orf1 Gene at MOPED

Post-translational modifications for C6orf1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C6orf1 Gene

Domains for C6orf1 Gene

Protein Domains for C6orf1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C6orf1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf1 Gene

Function for C6orf1 Gene

Molecular function for C6orf1 Gene

GENATLAS Biochemistry: chromosome 6 open reading frame 1,located 3of HMGIY,in opposite orientation

Phenotypes for C6orf1 Gene

genes like me logo Genes that share phenotypes with C6orf1: view

Animal Model Products

CRISPR Products

miRNA for C6orf1 Gene

miRTarBase miRNAs that target C6orf1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C6orf1 Gene

Localization for C6orf1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C6orf1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf1 Gene COMPARTMENTS Subcellular localization image for C6orf1 gene
Compartment Confidence
extracellular 3
mitochondrion 2
cytosol 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C6orf1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C6orf1: view

Pathways for C6orf1 Gene

SuperPathways for C6orf1 Gene

No Data Available

Interacting Proteins for C6orf1 Gene

Gene Ontology (GO) - Biological Process for C6orf1 Gene

None

No data available for Pathways by source for C6orf1 Gene

Transcripts for C6orf1 Gene

Unigene Clusters for C6orf1 Gene

Chromosome 6 open reading frame 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C6orf1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: - -
SP2: - - -
SP3: - -
SP4: -
SP5: - - -
SP6: - -
SP7: -

Relevant External Links for C6orf1 Gene

GeneLoc Exon Structure for
C6orf1
ECgene alternative splicing isoforms for
C6orf1

Expression for C6orf1 Gene

mRNA expression in normal human tissues for C6orf1 Gene

SOURCE GeneReport for Unigene cluster for C6orf1 Gene Hs.381300

mRNA Expression by UniProt/SwissProt for C6orf1 Gene

Q86T20-CF001_HUMAN
Tissue specificity: Expressed in spleen, thymus, prostate, testis, uterus, small intestine, colon and peripheral blood leukocytes.
genes like me logo Genes that share expressions with C6orf1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for C6orf1 Gene

Orthologs for C6orf1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf1 35
  • 99.78 (n)
  • 99.35 (a)
C6orf1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AI413582 16
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7226 35
zebrafish
(Danio rerio)
Actinopterygii Dr.3972 35
Species with no ortholog for C6orf1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf1 Gene

ENSEMBL:
Gene Tree for C6orf1 (if available)
TreeFam:
Gene Tree for C6orf1 (if available)

Paralogs for C6orf1 Gene

Selected SIMAP similar genes for C6orf1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with C6orf1: view

No data available for Paralogs for C6orf1 Gene

Variants for C6orf1 Gene

Sequence variations from dbSNP and Humsavar for C6orf1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs923943 -- 34,249,876(-) CGCCT(C/G)TAATC upstream-variant-2KB
rs923944 -- 34,249,849(-) CTGAG(A/G)CAGGT upstream-variant-2KB
rs928482 -- 34,247,444(+) AGGGC(A/G)GGTGG intron-variant
rs1150776 -- 34,250,101(+) ACAGC(G/T)GCCCC upstream-variant-2KB
rs1150777 -- 34,249,404(+) CCACG(A/C/G/T)TCTAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C6orf1 Gene

Variant ID Type Subtype PubMed ID
nsv885781 CNV Loss 21882294
nsv885784 CNV Loss 21882294

Relevant External Links for C6orf1 Gene

HapMap Linkage Disequilibrium report
C6orf1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf1 Gene

Disorders for C6orf1 Gene

Relevant External Links for C6orf1

Genetic Association Database (GAD)
C6orf1
Human Genome Epidemiology (HuGE) Navigator
C6orf1
genes like me logo Genes that share disorders with C6orf1: view

No data available for UniProtKB/Swiss-Prot for C6orf1 Gene

Publications for C6orf1 Gene

  1. Assignment of a new gene (LBH). (PMID: 10036196) Kazmierczak B. … Bullerdiek J. (Genomics 1999) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Identification of 15 loci influencing height in a Korean population. (PMID: 19893584) Kim J.J. … Lee J.K. (J. Hum. Genet. 2010) 3 48
  4. Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. (PMID: 21998595) N'Diaye A. … Haiman C.A. (PLoS Genet. 2011) 3 48
  5. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3

Products for C6orf1 Gene

Sources for C6orf1 Gene

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