Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C5orf66-AS2 Gene

Subcategory (RNA class) for C5orf66-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C5orf66-AS2 Gene

  • C5orf66 Antisense RNA 2 2 3 5
  • CTC-349C3.2 3

External Ids for C5orf66-AS2 Gene

Previous GeneCards Identifiers for C5orf66-AS2 Gene

  • GC05M134572

Summaries for C5orf66-AS2 Gene

GeneCards Summary for C5orf66-AS2 Gene

C5orf66-AS2 (C5orf66 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf66-AS2 Gene

Genomics for C5orf66-AS2 Gene

Regulatory Elements for C5orf66-AS2 Gene

Enhancers for C5orf66-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G135218 1.1 ENCODE dbSUPER 11.9 +28.9 28900 1.4 PKNOX1 NFIB SIN3A RAD21 ZNF335 GATA2 ZNF366 SCRT2 ZNF143 ETV6 C5orf66-AS2 LOC105379188
GH05G135225 0.7 dbSUPER 11.8 +21.9 21897 1.3 HDGF CTCF ETV1 ZMYM3 CEBPG UBTF RAD21 ZNF316 GATA2 POLR2A C5orf66-AS2 LOC105379188
GH05G135214 0.7 dbSUPER 11.2 +33.0 33008 0.6 BCOR USF1 ZNF146 BHLHE40 HLF CEBPB ZMYM3 MAX CEBPG RAD51 C5orf66-AS2 LOC105379188
GH05G135241 1.5 Ensembl ENCODE dbSUPER 5.2 +3.3 3288 6.3 HDGF FOXA2 ARNT CREB3L1 ZNF133 SIN3A ARID4B FEZF1 ZNF48 ZNF2 CAMLG ENSG00000254239 C5orf66-AS2 LOC105379188
GH05G135222 0.6 ENCODE dbSUPER 11.9 +25.8 25754 0.2 FOSL1 C5orf66-AS2 LOC105379188
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for C5orf66-AS2 Gene

Chromosome:
5
Start:
135,236,234 bp from pter
End:
135,248,179 bp from pter
Size:
11,946 bases
Orientation:
Minus strand

Genomic View for C5orf66-AS2 Gene

Genes around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf66-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf66-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf66-AS2 Gene

Proteins for C5orf66-AS2 Gene

Post-translational modifications for C5orf66-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C5orf66-AS2 Gene

Domains & Families for C5orf66-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf66-AS2 Gene

Function for C5orf66-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf66-AS2 Gene

Localization for C5orf66-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C5orf66-AS2 Gene

Pathways & Interactions for C5orf66-AS2 Gene

SuperPathways for C5orf66-AS2 Gene

No Data Available

Interacting Proteins for C5orf66-AS2 Gene

Gene Ontology (GO) - Biological Process for C5orf66-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf66-AS2 Gene

Drugs & Compounds for C5orf66-AS2 Gene

No Compound Related Data Available

Transcripts for C5orf66-AS2 Gene

mRNA/cDNA for C5orf66-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf66-AS2 Gene

No ASD Table

Relevant External Links for C5orf66-AS2 Gene

GeneLoc Exon Structure for
C5orf66-AS2
ECgene alternative splicing isoforms for
C5orf66-AS2

Expression for C5orf66-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf66-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf66-AS2 Gene

This gene is overexpressed in Testis (x25.5), Pituitary (x9.6), and Esophagus - Mucosa (x5.0).
genes like me logo Genes that share expression patterns with C5orf66-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf66-AS2 Gene

Orthologs for C5orf66-AS2 Gene

Evolution for C5orf66-AS2 Gene

ENSEMBL:
Gene Tree for C5orf66-AS2 (if available)
TreeFam:
Gene Tree for C5orf66-AS2 (if available)

No data available for Orthologs for C5orf66-AS2 Gene

Paralogs for C5orf66-AS2 Gene

No data available for Paralogs for C5orf66-AS2 Gene

Variants for C5orf66-AS2 Gene

Sequence variations from dbSNP and Humsavar for C5orf66-AS2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000057883 -- 135,236,179(+) ACTAC(A/C)TAGGT intron-variant
rs1000238555 -- 135,241,525(+) GCACC(A/G)CTGTG intron-variant
rs1000376726 -- 135,247,303(+) ACTGC(A/G)AAGTG intron-variant
rs1000558053 -- 135,246,335(+) AGGAA(C/G)ACCTG intron-variant
rs1000610938 -- 135,239,529(+) AGGCC(A/G)CATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf66-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv830496 CNV gain 17160897

Relevant External Links for C5orf66-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf66-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C5orf66-AS2 Gene

Disorders for C5orf66-AS2 Gene

Relevant External Links for C5orf66-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C5orf66-AS2

No disorders were found for C5orf66-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf66-AS2 Gene

Publications for C5orf66-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  3. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert T.A. … Walter M.J. (PLoS ONE 2009) 3 64

Products for C5orf66-AS2 Gene

Sources for C5orf66-AS2 Gene

Content
Loading form....