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Aliases for C5orf56 Gene

Subcategory (RNA class) for C5orf56 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for C5orf56 Gene

  • Chromosome 5 Open Reading Frame 56 2 3

External Ids for C5orf56 Gene

Previous GeneCards Identifiers for C5orf56 Gene

  • GC05P131775
  • GC05P126938

Summaries for C5orf56 Gene

GeneCards Summary for C5orf56 Gene

C5orf56 (Chromosome 5 Open Reading Frame 56) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf56 Gene

Genomics for C5orf56 Gene

Regulatory Elements for C5orf56 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C5orf56 Gene

Start:
132,410,636 bp from pter
End:
132,476,044 bp from pter
Size:
65,409 bases
Orientation:
Plus strand

Genomic View for C5orf56 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C5orf56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf56 Gene

Proteins for C5orf56 Gene

  • Protein details for C5orf56 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8D9-CE056_HUMAN
    Recommended name:
    Uncharacterized protein C5orf56
    Protein Accession:
    Q8N8D9
    Secondary Accessions:
    • A1L3V9
    • A6NKA0

    Protein attributes for C5orf56 Gene

    Size:
    126 amino acids
    Molecular mass:
    14652 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C5orf56 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C5orf56 Gene

Proteomics data for C5orf56 Gene at MOPED

Post-translational modifications for C5orf56 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C5orf56 Gene

No data available for DME Specific Peptides for C5orf56 Gene

Domains for C5orf56 Gene

Protein Domains for C5orf56 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf56: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf56 Gene

Function for C5orf56 Gene

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C5orf56

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C5orf56 Gene

Localization for C5orf56 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C5orf56 Gene COMPARTMENTS Subcellular localization image for C5orf56 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C5orf56 Gene

Pathways for C5orf56 Gene

SuperPathways for C5orf56 Gene

No Data Available

Interacting Proteins for C5orf56 Gene

Gene Ontology (GO) - Biological Process for C5orf56 Gene

None

No data available for Pathways by source for C5orf56 Gene

Transcripts for C5orf56 Gene

Unigene Clusters for C5orf56 Gene

Chromosome 5 open reading frame 56:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C5orf56

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C5orf56
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf56 Gene

No ASD Table

Relevant External Links for C5orf56 Gene

GeneLoc Exon Structure for
C5orf56
ECgene alternative splicing isoforms for
C5orf56

Expression for C5orf56 Gene

mRNA expression in normal human tissues for C5orf56 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C5orf56 Gene

SOURCE GeneReport for Unigene cluster for C5orf56 Gene Hs.658288

genes like me logo Genes that share expressions with C5orf56: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C5orf56 Gene

Orthologs for C5orf56 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C5orf56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5orf56 36
  • 99 (a)
OneToOne
Species with no ortholog for C5orf56:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C5orf56 Gene

ENSEMBL:
Gene Tree for C5orf56 (if available)
TreeFam:
Gene Tree for C5orf56 (if available)

Paralogs for C5orf56 Gene

No data available for Paralogs for C5orf56 Gene

Variants for C5orf56 Gene

Sequence variations from dbSNP and Humsavar for C5orf56 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs726923 -- 132,450,726(+) CATTC(A/C)TACAA intron-variant
rs757103 -- 132,430,738(+) CCAAT(C/G)AGCAA intron-variant
rs757104 -- 132,459,537(+) GCCAC(C/T)CCCCC intron-variant
rs757105 -- 132,459,971(+) GTGGG(C/T)GCTGA intron-variant
rs886285 -- 132,429,514(+) AAGAC(C/T)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf56 Gene

Variant ID Type Subtype PubMed ID
nsv882898 CNV Loss 21882294
nsv471048 CNV Gain 18288195
nsv462452 CNV Gain 19166990
nsv5002 CNV Insertion 18451855
esv2730790 CNV Deletion 23290073

Relevant External Links for C5orf56 Gene

HapMap Linkage Disequilibrium report
C5orf56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C5orf56 Gene

Disorders for C5orf56 Gene

Relevant External Links for C5orf56

Genetic Association Database (GAD)
C5orf56
Human Genome Epidemiology (HuGE) Navigator
C5orf56
genes like me logo Genes that share disorders with C5orf56: view

No data available for UniProtKB/Swiss-Prot for C5orf56 Gene

Publications for C5orf56 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. (PMID: 18587394) Barrett J.C. … Daly M.J. (Nat. Genet. 2008) 3 48
  3. Analysis of 39 Crohn's disease risk loci in Swedish inflammatory bowel disease patients. (PMID: 19760754) TAPrkvist L. … Pettersson S. (Inflamm. Bowel Dis. 2010) 3 48
  4. Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts. (PMID: 20031576) Dehghan A. … Folsom A.R. (Circ Cardiovasc Genet 2009) 3 48
  5. Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study. (PMID: 20031577) Danik J.S. … Ridker P.M. (Circ Cardiovasc Genet 2009) 3 48

Products for C5orf56 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C5orf56
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for C5orf56
  • Block miRNA regulation of C5orf56 using miScript Target Protectors

Sources for C5orf56 Gene

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