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Aliases for C5orf52 Gene

Aliases for C5orf52 Gene

  • Chromosome 5 Open Reading Frame 52 2 3 5

External Ids for C5orf52 Gene

Previous GeneCards Identifiers for C5orf52 Gene

  • GC05U901052
  • GC05P157032
  • GC05P157098
  • GC05P152187

Summaries for C5orf52 Gene

GeneCards Summary for C5orf52 Gene

C5orf52 (Chromosome 5 Open Reading Frame 52) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf52 Gene

Genomics for C5orf52 Gene

Regulatory Elements for C5orf52 Gene

Enhancers for C5orf52 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C5orf52 on UCSC Golden Path with GeneCards custom track

Promoters for C5orf52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C5orf52 on UCSC Golden Path with GeneCards custom track

Genomic Location for C5orf52 Gene

Chromosome:
5
Start:
157,671,237 bp from pter
End:
157,680,176 bp from pter
Size:
8,940 bases
Orientation:
Plus strand

Genomic View for C5orf52 Gene

Genes around C5orf52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf52 Gene

Proteins for C5orf52 Gene

  • Protein details for C5orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGY3-CE052_HUMAN
    Recommended name:
    Uncharacterized protein C5orf52
    Protein Accession:
    A6NGY3

    Protein attributes for C5orf52 Gene

    Size:
    159 amino acids
    Molecular mass:
    17908 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C5orf52 Gene

Proteomics data for C5orf52 Gene at MOPED

Post-translational modifications for C5orf52 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C5orf52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C5orf52 Gene

Domains & Families for C5orf52 Gene

Protein Domains for C5orf52 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf52: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf52 Gene

Function for C5orf52 Gene

Phenotypes for C5orf52 Gene

MGI mutant phenotypes for C5orf52:
inferred from 1 alleles
GenomeRNAi human phenotypes for C5orf52:
genes like me logo Genes that share phenotypes with C5orf52: view

Animal Models for C5orf52 Gene

MGI Knock Outs for C5orf52:

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for C5orf52 Gene

Localization for C5orf52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C5orf52 Gene COMPARTMENTS Subcellular localization image for C5orf52 gene
Compartment Confidence
nucleus 2
cytosol 1
endoplasmic reticulum 1
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C5orf52 Gene

Pathways & Interactions for C5orf52 Gene

SuperPathways for C5orf52 Gene

No Data Available

Interacting Proteins for C5orf52 Gene

Gene Ontology (GO) - Biological Process for C5orf52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf52 Gene

Drugs & Compounds for C5orf52 Gene

No Compound Related Data Available

Transcripts for C5orf52 Gene

mRNA/cDNA for C5orf52 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C5orf52 Gene

Chromosome 5 open reading frame 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf52 Gene

No ASD Table

Relevant External Links for C5orf52 Gene

GeneLoc Exon Structure for
C5orf52
ECgene alternative splicing isoforms for
C5orf52

Expression for C5orf52 Gene

mRNA expression in normal human tissues for C5orf52 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf52 Gene

This gene is overexpressed in Testis (x48.6).

SOURCE GeneReport for Unigene cluster for C5orf52 Gene Hs.720862

genes like me logo Genes that share expression patterns with C5orf52: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C5orf52 Gene

Orthologs for C5orf52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C5orf52 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C17H5orf52 35
  • 74.94 (n)
  • 64.43 (a)
C5orf52 36
  • 48 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100687383 35
  • 76.89 (n)
  • 62.67 (a)
C5orf52 36
  • 43 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4921536K21Rik 35
  • 68.52 (n)
  • 56.25 (a)
4921536K21Rik 16
4921536K21Rik 36
  • 47 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C5H5orf52 35
  • 99.37 (n)
  • 98.74 (a)
C5orf52 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308775 35
  • 70.37 (n)
  • 56.25 (a)
oppossum
(Monodelphis domestica)
Mammalia C5orf52 36
  • 37 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C5orf52 36
  • 35 (a)
OneToOne
Species with no ortholog for C5orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C5orf52 Gene

ENSEMBL:
Gene Tree for C5orf52 (if available)
TreeFam:
Gene Tree for C5orf52 (if available)

Paralogs for C5orf52 Gene

No data available for Paralogs for C5orf52 Gene

Variants for C5orf52 Gene

Sequence variations from dbSNP and Humsavar for C5orf52 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs4094449 -- 157,676,757(-) CTCTG(C/T)CCTAT intron-variant
rs1895343 -- 157,676,913(-) CCAGC(C/T)TGAGC intron-variant
rs6884959 -- 157,675,177(+) GCATC(A/G)CACAA reference, missense
rs2098673 -- 157,679,628(-) CTGGC(A/G)CAGTG intron-variant
rs4704747 -- 157,674,849(+) GCACT(A/G)GGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf52 Gene

Variant ID Type Subtype PubMed ID
dgv1868e1 CNV Complex 17122850
esv2730960 CNV Deletion 23290073

Variation tolerance for C5orf52 Gene

Gene Damage Index Score: 8.31; 85.24% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C5orf52 Gene

Disorders for C5orf52 Gene

Relevant External Links for C5orf52

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C5orf52

No disorders were found for C5orf52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf52 Gene

Publications for C5orf52 Gene

  1. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 3 4 67
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for C5orf52 Gene

Sources for C5orf52 Gene

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