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Aliases for C5orf47 Gene

Aliases for C5orf47 Gene

  • Chromosome 5 Open Reading Frame 47 2 3

External Ids for C5orf47 Gene

Previous GeneCards Identifiers for C5orf47 Gene

  • GC05P173334
  • GC05P168512
  • GC05P173400

Summaries for C5orf47 Gene

GeneCards Summary for C5orf47 Gene

C5orf47 (Chromosome 5 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf47 Gene

Genomics for C5orf47 Gene

Regulatory Elements for C5orf47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C5orf47 Gene

Start:
173,973,779 bp from pter
End:
174,026,957 bp from pter
Size:
53,179 bases
Orientation:
Plus strand

Genomic View for C5orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C5orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf47 Gene

Proteins for C5orf47 Gene

  • Protein details for C5orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q569G3-CE047_HUMAN
    Recommended name:
    Uncharacterized protein C5orf47
    Protein Accession:
    Q569G3
    Secondary Accessions:
    • Q8IYU7

    Protein attributes for C5orf47 Gene

    Size:
    176 amino acids
    Molecular mass:
    19206 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH34971.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH92489.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C5orf47 Gene

Proteomics data for C5orf47 Gene at MOPED

Post-translational modifications for C5orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C5orf47 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C5orf47 Gene

Domains for C5orf47 Gene

Protein Domains for C5orf47 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf47 Gene

Function for C5orf47 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C5orf47 Gene

Localization for C5orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C5orf47 Gene COMPARTMENTS Subcellular localization image for C5orf47 gene
Compartment Confidence
nucleus 2
cytosol 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C5orf47 Gene

Pathways for C5orf47 Gene

SuperPathways for C5orf47 Gene

No Data Available

Interacting Proteins for C5orf47 Gene

Gene Ontology (GO) - Biological Process for C5orf47 Gene

None

No data available for Pathways by source for C5orf47 Gene

Transcripts for C5orf47 Gene

mRNA/cDNA for C5orf47 Gene

Unigene Clusters for C5orf47 Gene

Chromosome 5 open reading frame 47:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C5orf47

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C5orf47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf47 Gene

No ASD Table

Relevant External Links for C5orf47 Gene

GeneLoc Exon Structure for
C5orf47
ECgene alternative splicing isoforms for
C5orf47

Expression for C5orf47 Gene

mRNA expression in normal human tissues for C5orf47 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf47 Gene

This gene is overexpressed in Testis (44.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C5orf47 Gene

SOURCE GeneReport for Unigene cluster for C5orf47 Gene Hs.131469

genes like me logo Genes that share expressions with C5orf47: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C5orf47 Gene

Orthologs for C5orf47 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C5orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5H5orf47 35
  • 98.67 (n)
  • 96.59 (a)
C5orf47 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5orf47 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930524B15Rik 35
  • 66.25 (n)
  • 54.72 (a)
4930524B15Rik 16
4930524B15Rik 36
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1311343 35
  • 64.95 (n)
  • 52.9 (a)
Species with no ortholog for C5orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C5orf47 Gene

ENSEMBL:
Gene Tree for C5orf47 (if available)
TreeFam:
Gene Tree for C5orf47 (if available)

Paralogs for C5orf47 Gene

No data available for Paralogs for C5orf47 Gene

Variants for C5orf47 Gene

Sequence variations from dbSNP and Humsavar for C5orf47 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs1319509 -- 174,002,567(+) TTTTA(A/C)CATCT intron-variant
rs1422957 -- 173,995,476(-) AACCA(C/T)GGATT intron-variant
rs1422958 -- 173,995,379(-) CATCT(A/G)TGCCT intron-variant
rs1422959 -- 174,025,045(-) GGAAG(A/G)TGCTT intron-variant
rs1895353 -- 174,025,588(-) TGTTA(C/T)GAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf47 Gene

Variant ID Type Subtype PubMed ID
esv2497414 CNV Deletion 19546169

Relevant External Links for C5orf47 Gene

HapMap Linkage Disequilibrium report
C5orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C5orf47 Gene

Disorders for C5orf47 Gene

No disorders were found for C5orf47 Gene.

No data available for UniProtKB/Swiss-Prot for C5orf47 Gene

Publications for C5orf47 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C5orf47 Gene

Sources for C5orf47 Gene

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