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Aliases for C5orf24 Gene

Aliases for C5orf24 Gene

  • Chromosome 5 Open Reading Frame 24 2 3

External Ids for C5orf24 Gene

Summaries for C5orf24 Gene

GeneCards Summary for C5orf24 Gene

C5orf24 (Chromosome 5 Open Reading Frame 24) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf24 Gene

Genomics for C5orf24 Gene

Genomic Location for C5orf24 Gene

Start:
134,845,680 bp from pter
End:
134,859,737 bp from pter
Size:
14,058 bases
Orientation:
Plus strand

Genomic View for C5orf24 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C5orf24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf24 Gene

Regulatory Elements for C5orf24 Gene

Proteins for C5orf24 Gene

  • Protein details for C5orf24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z6I8-CE024_HUMAN
    Recommended name:
    UPF0461 protein C5orf24
    Protein Accession:
    Q7Z6I8
    Secondary Accessions:
    • D3DQA7
    • Q86Y53
    • Q8N1T9

    Protein attributes for C5orf24 Gene

    Size:
    188 amino acids
    Molecular mass:
    20132 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C5orf24 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C5orf24 Gene

Proteomics data for C5orf24 Gene at MOPED

Post-translational modifications for C5orf24 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys41 and Lys146

Other Protein References for C5orf24 Gene

No data available for DME Specific Peptides for C5orf24 Gene

Domains for C5orf24 Gene

Protein Domains for C5orf24 Gene

ProtoNet:

UniProtKB/Swiss-Prot:

CE024_HUMAN
Family:
  • Belongs to the UPF0461 family.:
    • Q7Z6I8
genes like me logo Genes that share domains with C5orf24: view

No data available for Gene Families for C5orf24 Gene

Function for C5orf24 Gene

Gene Ontology (GO) - Molecular Function for C5orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C5orf24: view

Phenotypes for C5orf24 Gene

GenomeRNAi human phenotypes for C5orf24:
genes like me logo Genes that share phenotypes with C5orf24: view

miRNA for C5orf24 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C5orf24 Gene

Localization for C5orf24 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C5orf24 Gene COMPARTMENTS Subcellular localization image for C5orf24 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for C5orf24 Gene

Pathways for C5orf24 Gene

SuperPathways for C5orf24 Gene

No Data Available

Interacting Proteins for C5orf24 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000337044%0d%0a9606.ENSP00000309953%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000337044 Q7Z6I8-CE024_HUMAN for C5orf24 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for C5orf24 Gene

None

No data available for Pathways by source for C5orf24 Gene

Transcripts for C5orf24 Gene

Unigene Clusters for C5orf24 Gene

Chromosome 5 open reading frame 24:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf24 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5a · 5b
SP1: - - - -
SP2:
SP3: - - - -
SP4: - - - -
SP5: -

Relevant External Links for C5orf24 Gene

GeneLoc Exon Structure for
C5orf24
ECgene alternative splicing isoforms for
C5orf24

Expression for C5orf24 Gene

mRNA expression in normal human tissues for C5orf24 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C5orf24 Gene

SOURCE GeneReport for Unigene cluster for C5orf24 Gene Hs.708536

genes like me logo Genes that share expressions with C5orf24: view

Orthologs for C5orf24 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C5orf24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5H5orf24 36
  • 99.65 (n)
  • 100 (a)
C5orf24 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C7H5orf24 36
  • 95.39 (n)
  • 96.81 (a)
C7H5orf24 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C11H5orf24 36
  • 95.04 (n)
  • 97.87 (a)
C5orf24 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia B230219D22Rik 36
  • 91.49 (n)
  • 93.62 (a)
B230219D22Rik 16
B230219D22Rik 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C5orf24 37
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C5orf24 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1566359 36
  • 89.36 (n)
  • 90.96 (a)
chicken
(Gallus gallus)
Aves C13H5ORF24 36
  • 82.62 (n)
  • 84.04 (a)
C5orf24 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C5orf24 37
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c5orf24 36
  • 74.91 (n)
  • 71.51 (a)
zebrafish
(Danio rerio)
Actinopterygii C21H5orf24 (2 of 2) 37
  • 35 (a)
OneToMany
C5orf24 (1 of 2) 37
  • 46 (a)
OneToMany
LOC797133 36
  • 59.88 (n)
  • 60.48 (a)
Species with no ortholog for C5orf24:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C5orf24 Gene

ENSEMBL:
Gene Tree for C5orf24 (if available)
TreeFam:
Gene Tree for C5orf24 (if available)

Paralogs for C5orf24 Gene

No data available for Paralogs for C5orf24 Gene

Variants for C5orf24 Gene

Sequence variations from dbSNP and Humsavar for C5orf24 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs15236 -- 134,858,862(-) TGATT(A/T)TTTAA utr-variant-3-prime
rs1468606 -- 134,849,518(+) TCTCA(C/T)ATTAA intron-variant
rs3200480 -- 134,859,543(+) TAATT(A/C)CCAAT utr-variant-3-prime
rs3748044 -- 134,845,255(+) GAATT(C/G)TCCAT upstream-variant-2KB
rs4362989 -- 134,854,886(+) TCTTT(A/T)ATTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf24 Gene

Variant ID Type Subtype PubMed ID
nsv830493 CNV Loss 17160897
nsv523937 CNV Gain 19592680
nsv830494 CNV Gain+Loss 17160897

Relevant External Links for C5orf24 Gene

HapMap Linkage Disequilibrium report
C5orf24

Disorders for C5orf24 Gene

No disorders were found for C5orf24 Gene.

No data available for UniProtKB/Swiss-Prot for C5orf24 Gene

Publications for C5orf24 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for C5orf24 Gene

Sources for C5orf24 Gene

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