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Aliases for C5orf17 Gene

Subcategory (RNA class) for C5orf17 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for C5orf17 Gene

  • Chromosome 5 Open Reading Frame 17 2 3 5

External Ids for C5orf17 Gene

Previous GeneCards Identifiers for C5orf17 Gene

  • GC00U916960
  • GC05U900659
  • GC05P023988

Summaries for C5orf17 Gene

GeneCards Summary for C5orf17 Gene

C5orf17 (Chromosome 5 Open Reading Frame 17) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for C5orf17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf17 Gene

Genomics for C5orf17 Gene

Regulatory Elements for C5orf17 Gene

Enhancers for C5orf17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H024283 0.8 FANTOM5 dbSUPER 6.3 +332.0 332005 0 POLR2A TCF7L2 C5orf17 LOC105374689 LOC503540
GH05H024263 0.5 dbSUPER 8.1 +313.5 313465 2 SREBF1 STAT1 POLR2A CEBPB MNT C5orf17 LOC105374689 LOC503540
GH05H024266 0.4 dbSUPER 8.6 +316.5 316502 2 RAD21 C5orf17 LOC105374689 LOC503540
GH05H024285 0.5 dbSUPER 6.8 +339.7 339665 10 NFYB CEBPB ATF7 ATF2 C5orf17 LOC105374689 LOC503540
GH05H024258 0.2 dbSUPER 8.3 +308.5 308522 1 C5orf17 LOC105374689 LOC503540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C5orf17 on UCSC Golden Path with GeneCards custom track

Genomic Location for C5orf17 Gene

Chromosome:
5
Start:
23,951,348 bp from pter
End:
24,201,313 bp from pter
Size:
249,966 bases
Orientation:
Plus strand

Genomic View for C5orf17 Gene

Genes around C5orf17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf17 Gene

Proteins for C5orf17 Gene

  • Protein details for C5orf17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAS9-CE017_HUMAN
    Recommended name:
    Uncharacterized protein C5orf17
    Protein Accession:
    Q8NAS9
    Secondary Accessions:
    • Q2I376

    Protein attributes for C5orf17 Gene

    Size:
    161 amino acids
    Molecular mass:
    17397 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C5orf17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C5orf17 Gene

Post-translational modifications for C5orf17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C5orf17 Gene

Domains & Families for C5orf17 Gene

Protein Domains for C5orf17 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf17: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf17 Gene

Function for C5orf17 Gene

Phenotypes From GWAS Catalog for C5orf17 Gene

Phenotypes for C5orf17 Gene

genes like me logo Genes that share phenotypes with C5orf17: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for C5orf17
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf17 Gene

Localization for C5orf17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf17 Gene

Pathways & Interactions for C5orf17 Gene

SuperPathways for C5orf17 Gene

No Data Available

Interacting Proteins for C5orf17 Gene

Gene Ontology (GO) - Biological Process for C5orf17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf17 Gene

Drugs & Compounds for C5orf17 Gene

No Compound Related Data Available

Transcripts for C5orf17 Gene

mRNA/cDNA for C5orf17 Gene

(4) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C5orf17 Gene

Chromosome 5 open reading frame 17:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for C5orf17
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf17 Gene

No ASD Table

Relevant External Links for C5orf17 Gene

GeneLoc Exon Structure for
C5orf17
ECgene alternative splicing isoforms for
C5orf17

Expression for C5orf17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf17 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf17 Gene

This gene is overexpressed in Minor Salivary Gland (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of C5orf17 Gene:

C5orf17

SOURCE GeneReport for Unigene cluster for C5orf17 Gene:

Hs.638078
genes like me logo Genes that share expression patterns with C5orf17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf17 Gene

Orthologs for C5orf17 Gene

Evolution for C5orf17 Gene

ENSEMBL:
Gene Tree for C5orf17 (if available)
TreeFam:
Gene Tree for C5orf17 (if available)

No data available for Orthologs for C5orf17 Gene

Paralogs for C5orf17 Gene

(1) SIMAP similar genes for C5orf17 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C5orf17: view

No data available for Paralogs for C5orf17 Gene

Variants for C5orf17 Gene

Sequence variations from dbSNP and Humsavar for C5orf17 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000015373 -- 23,988,850(+) GTCAC(A/G)TGTAC intron-variant
rs1000016808 -- 24,101,323(+) TCAGC(A/G)CTTTG intron-variant
rs1000056414 -- 24,043,120(+) ATATA(C/G)GTACT intron-variant
rs1000060087 -- 24,148,332(+) TGATT(C/T)GCTTT intron-variant
rs1000062147 -- 23,950,948(+) TTACT(A/G)ATGTC upstream-variant-2KB

Variation tolerance for C5orf17 Gene

Gene Damage Index Score: 4.87; 67.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C5orf17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C5orf17 Gene

Disorders for C5orf17 Gene

Relevant External Links for C5orf17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C5orf17

No disorders were found for C5orf17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf17 Gene

Publications for C5orf17 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere shortening. (PMID: 22379092) Shamay M … Hayward SD (Journal of virology 2012) 3 60

Products for C5orf17 Gene

Sources for C5orf17 Gene

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