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Aliases for C4orf50 Gene

Aliases for C4orf50 Gene

  • Chromosome 4 Open Reading Frame 50 2 3

External Ids for C4orf50 Gene

Previous GeneCards Identifiers for C4orf50 Gene

  • GC04M006009
  • GC04M005899
  • GC04M005958

Summaries for C4orf50 Gene

GeneCards Summary for C4orf50 Gene

C4orf50 (Chromosome 4 Open Reading Frame 50) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf50 Gene

Genomics for C4orf50 Gene

Regulatory Elements for C4orf50 Gene

Genomic Location for C4orf50 Gene

Start:
5,897,591 bp from pter
End:
5,990,448 bp from pter
Size:
92,858 bases
Orientation:
Minus strand

Genomic View for C4orf50 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf50 Gene

Proteins for C4orf50 Gene

  • Protein details for C4orf50 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZRC1-CD050_HUMAN
    Recommended name:
    Uncharacterized protein C4orf50
    Protein Accession:
    Q6ZRC1
    Secondary Accessions:

    Protein attributes for C4orf50 Gene

    Size:
    276 amino acids
    Molecular mass:
    30622 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C4orf50 Gene

Proteomics data for C4orf50 Gene at MOPED

Post-translational modifications for C4orf50 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C4orf50 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for C4orf50 Gene

Domains for C4orf50 Gene

Protein Domains for C4orf50 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C4orf50: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C4orf50 Gene

Function for C4orf50 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C4orf50 Gene

Localization for C4orf50 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf50 Gene COMPARTMENTS Subcellular localization image for C4orf50 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C4orf50 Gene

Pathways for C4orf50 Gene

SuperPathways for C4orf50 Gene

No Data Available

Interacting Proteins for C4orf50 Gene

Gene Ontology (GO) - Biological Process for C4orf50 Gene

None

No data available for Pathways by source for C4orf50 Gene

Transcripts for C4orf50 Gene

mRNA/cDNA for C4orf50 Gene

(13) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(5) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C4orf50 Gene

Chromosome 4 open reading frame 50:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf50 Gene

No ASD Table

Relevant External Links for C4orf50 Gene

GeneLoc Exon Structure for
C4orf50
ECgene alternative splicing isoforms for
C4orf50

Expression for C4orf50 Gene

mRNA expression in normal human tissues for C4orf50 Gene

mRNA differential expression in normal tissues according to GTEx for C4orf50 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (11.4), Brain - Frontal Cortex (BA9) (6.0), Brain - Anterior cingulate cortex (BA24) (5.5), Brain - Caudate (basal ganglia) (5.2), Brain - Cortex (4.9), and Brain - Putamen (basal ganglia) (4.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C4orf50 Gene

SOURCE GeneReport for Unigene cluster for C4orf50 Gene Hs.479065

genes like me logo Genes that share expressions with C4orf50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C4orf50 Gene

Orthologs for C4orf50 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C4orf50 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4orf50 36
  • 98 (a)
OneToOne
LOC750617 35
  • 98.87 (n)
  • 98.3 (a)
cow
(Bos Taurus)
Mammalia C4orf50 36
  • 60 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C4orf50 36
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm1043 35
  • 63.81 (n)
  • 49.47 (a)
Gm1043 16
Gm1043 36
  • 46 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C4orf50 36
  • 13 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102553825 35
  • 65.35 (n)
  • 49.01 (a)
Species with no ortholog for C4orf50:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C4orf50 Gene

ENSEMBL:
Gene Tree for C4orf50 (if available)
TreeFam:
Gene Tree for C4orf50 (if available)

Paralogs for C4orf50 Gene

Selected SIMAP similar genes for C4orf50 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with C4orf50: view

No data available for Paralogs for C4orf50 Gene

Variants for C4orf50 Gene

Sequence variations from dbSNP and Humsavar for C4orf50 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs726111 -- 5,910,256(+) CCAAG(A/G)ACAGG intron-variant
rs726112 -- 5,910,077(+) TGAAT(C/G)TGTAG intron-variant
rs733370 -- 5,957,408(+) ATGAC(A/G)TTGTC utr-variant-3-prime
rs734759 -- 5,941,112(+) ctcaa(C/T)catat intron-variant
rs734760 -- 5,941,245(+) tgtca(C/T)tctga intron-variant

Relevant External Links for C4orf50 Gene

HapMap Linkage Disequilibrium report
C4orf50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C4orf50 Gene

Disorders for C4orf50 Gene

Relevant External Links for C4orf50

Genetic Association Database (GAD)
C4orf50
Human Genome Epidemiology (HuGE) Navigator
C4orf50
genes like me logo Genes that share disorders with C4orf50: view

No data available for UniProtKB/Swiss-Prot for C4orf50 Gene

Publications for C4orf50 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  2. Genome-wide association study identifies loci affecting blood copper, selenium and zinc. (PMID: 23720494) Evans D.M. … Whitfield J.B. (Hum. Mol. Genet. 2013) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. The consensus coding sequences of human breast and colorectal cancers. (PMID: 16959974) Sjoeblom T. … Velculescu V.E. (Science 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C4orf50 Gene

Sources for C4orf50 Gene

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