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Aliases for C4orf47 Gene

Aliases for C4orf47 Gene

  • Chromosome 4 Open Reading Frame 47 2 3

External Ids for C4orf47 Gene

Summaries for C4orf47 Gene

GeneCards Summary for C4orf47 Gene

C4orf47 (Chromosome 4 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf47 Gene

Genomics for C4orf47 Gene

Genomic Location for C4orf47 Gene

Start:
185,426,028 bp from pter
End:
185,449,828 bp from pter
Size:
23,801 bases
Orientation:
Plus strand

Genomic View for C4orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf47 Gene

Regulatory Elements for C4orf47 Gene

Proteins for C4orf47 Gene

  • Protein details for C4orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A7E2U8-CD047_HUMAN
    Recommended name:
    UPF0602 protein C4orf47
    Protein Accession:
    A7E2U8
    Secondary Accessions:
    • Q5BLP7

    Protein attributes for C4orf47 Gene

    Size:
    309 amino acids
    Molecular mass:
    34376 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C4orf47 Gene

Proteomics data for C4orf47 Gene at MOPED

Post-translational modifications for C4orf47 Gene

No Post-translational modifications

Other Protein References for C4orf47 Gene

No data available for DME Specific Peptides for C4orf47 Gene

Domains for C4orf47 Gene

Protein Domains for C4orf47 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CD047_HUMAN
Family:
  • Belongs to the UPF0602 family.:
    • A7E2U8
genes like me logo Genes that share domains with C4orf47: view

No data available for Gene Families for C4orf47 Gene

Function for C4orf47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C4orf47 Gene

Localization for C4orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf47 Gene COMPARTMENTS Subcellular localization image for C4orf47 gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for C4orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005813 centrosome IDA 25074808
genes like me logo Genes that share ontologies with C4orf47: view

Pathways for C4orf47 Gene

SuperPathways for C4orf47 Gene

No Data Available

Interacting Proteins for C4orf47 Gene

Gene Ontology (GO) - Biological Process for C4orf47 Gene

None

No data available for Pathways by source for C4orf47 Gene

Transcripts for C4orf47 Gene

Unigene Clusters for C4orf47 Gene

Chromosome 4 open reading frame 47:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf47 Gene

No ASD Table

Relevant External Links for C4orf47 Gene

GeneLoc Exon Structure for
C4orf47
ECgene alternative splicing isoforms for
C4orf47

Expression for C4orf47 Gene

mRNA expression in normal human tissues for C4orf47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C4orf47 Gene

This gene is overexpressed in Testis (6.8) and Brain - Caudate (basal ganglia) (4.4).

SOURCE GeneReport for Unigene cluster for C4orf47 Gene Hs.549398

mRNA Expression by UniProt/SwissProt for C4orf47 Gene

A7E2U8-CD047_HUMAN
Tissue specificity: Detected in testis and fetal liver.
genes like me logo Genes that share expressions with C4orf47: view

Orthologs for C4orf47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C4orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4H4orf47 36
  • 98.17 (n)
  • 97.73 (a)
C4orf47 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C27H4orf47 36
  • 87.27 (n)
  • 83.82 (a)
C4orf47 37
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16H4orf47 36
  • 89.21 (n)
  • 86.73 (a)
C4orf47 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700029J07Rik 36
  • 81.2 (n)
  • 77.7 (a)
1700029J07Rik 16
1700029J07Rik 37
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C4orf47 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C4orf47 37
  • 71 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1564308 36
  • 81.64 (n)
  • 78.36 (a)
chicken
(Gallus gallus)
Aves C4H4ORF47 36
  • 72.62 (n)
  • 68.18 (a)
C4orf47 37
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C4orf47 37
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c4orf47 36
  • 63.82 (n)
  • 58.55 (a)
zebrafish
(Danio rerio)
Actinopterygii C14H4orf47 37
  • 55 (a)
OneToOne
zgc:153146 36
  • 62.56 (n)
  • 55.67 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 54 (a)
OneToOne
Species with no ortholog for C4orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C4orf47 Gene

ENSEMBL:
Gene Tree for C4orf47 (if available)
TreeFam:
Gene Tree for C4orf47 (if available)

Paralogs for C4orf47 Gene

No data available for Paralogs for C4orf47 Gene

Variants for C4orf47 Gene

Sequence variations from dbSNP and Humsavar for C4orf47 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1443901 -- 185,437,716(-) ATTAC(A/T)GAGCC intron-variant
rs1443902 -- 185,437,585(-) TGTTC(C/T)TGAGT intron-variant
rs1899706 -- 185,443,589(-) GGTGG(A/G)TCACC intron-variant
rs1899707 -- 185,443,344(-) aaaaa(A/T)atata intron-variant
rs1992579 -- 185,434,128(-) ttccc(C/T)gcaac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C4orf47 Gene

Variant ID Type Subtype PubMed ID
nsv428456 CNV Gain+Loss 18775914
nsv881506 CNV Gain 21882294
dgv1724e1 CNV Complex 17122850
nsv527026 CNV Gain 19592680
nsv4638 CNV Insertion 18451855
esv268794 CNV Insertion 20981092
esv273979 CNV Insertion 20981092
esv1192975 CNV Insertion 17803354
nsv517035 CNV Gain+Loss 19592680

Relevant External Links for C4orf47 Gene

HapMap Linkage Disequilibrium report
C4orf47

Disorders for C4orf47 Gene

Relevant External Links for C4orf47

Genetic Association Database (GAD)
C4orf47
Human Genome Epidemiology (HuGE) Navigator
C4orf47
genes like me logo Genes that share disorders with C4orf47: view

No data available for UniProtKB/Swiss-Prot for C4orf47 Gene

Publications for C4orf47 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes. (PMID: 15809229) Castelo R. … Eyras E. (Nucleic Acids Res. 2005) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Proteomic analysis of mammalian sperm cells identifies new components of the centrosome. (PMID: 25074808) Firat-Karalar E.N. … Stearns T. (J. Cell Sci. 2014) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C4orf47 Gene

Sources for C4orf47 Gene

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