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Aliases for C4orf45 Gene

Aliases for C4orf45 Gene

  • Chromosome 4 Open Reading Frame 45 2 3

External Ids for C4orf45 Gene

Summaries for C4orf45 Gene

GeneCards Summary for C4orf45 Gene

C4orf45 (Chromosome 4 Open Reading Frame 45) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf45 Gene

Genomics for C4orf45 Gene

Genomic Location for C4orf45 Gene

Start:
158,893,134 bp from pter
End:
159,038,760 bp from pter
Size:
145,627 bases
Orientation:
Minus strand

Genomic View for C4orf45 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf45 Gene

Regulatory Elements for C4orf45 Gene

Proteins for C4orf45 Gene

  • Protein details for C4orf45 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LM5-CD045_HUMAN
    Recommended name:
    Uncharacterized protein C4orf45
    Protein Accession:
    Q96LM5
    Secondary Accessions:
    • A8MPU3
    • C9J0T8

    Protein attributes for C4orf45 Gene

    Size:
    186 amino acids
    Molecular mass:
    21723 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB71665.1; Type=Frameshift; Positions=178; Evidence={ECO:0000305};

neXtProt entry for C4orf45 Gene

Proteomics data for C4orf45 Gene at MOPED

Post-translational modifications for C4orf45 Gene

No Post-translational modifications

Other Protein References for C4orf45 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C4orf45 Gene

Domains for C4orf45 Gene

Protein Domains for C4orf45 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C4orf45: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C4orf45 Gene

Function for C4orf45 Gene

Phenotypes for C4orf45 Gene

GenomeRNAi human phenotypes for C4orf45:
genes like me logo Genes that share phenotypes with C4orf45: view

miRNA for C4orf45 Gene

miRTarBase miRNAs that target C4orf45

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C4orf45 Gene

Localization for C4orf45 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf45 Gene COMPARTMENTS Subcellular localization image for C4orf45 gene
Compartment Confidence
nucleus 2
cytosol 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for C4orf45 Gene

Pathways for C4orf45 Gene

SuperPathways for C4orf45 Gene

No Data Available

Interacting Proteins for C4orf45 Gene

Gene Ontology (GO) - Biological Process for C4orf45 Gene

None

No data available for Pathways by source for C4orf45 Gene

Transcripts for C4orf45 Gene

mRNA/cDNA for C4orf45 Gene

(4) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C4orf45 Gene

Chromosome 4 open reading frame 45:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf45 Gene

No ASD Table

Relevant External Links for C4orf45 Gene

GeneLoc Exon Structure for
C4orf45
ECgene alternative splicing isoforms for
C4orf45

Expression for C4orf45 Gene

mRNA expression in normal human tissues for C4orf45 Gene

mRNA differential expression in normal tissues according to GTEx for C4orf45 Gene

This gene is overexpressed in Testis (36.9).

SOURCE GeneReport for Unigene cluster for C4orf45 Gene Hs.415576

genes like me logo Genes that share expressions with C4orf45: view

Orthologs for C4orf45 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C4orf45 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4H4orf45 36
  • 98.82 (n)
  • 97.63 (a)
C4orf45 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17H4orf45 36
  • 74.71 (n)
  • 65.29 (a)
C17H4orf45 37
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C15H4orf45 36
  • 80.54 (n)
  • 71.35 (a)
C4orf45 37
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm17359 36
  • 75.61 (n)
  • 67.07 (a)
Gm17359 16
Gm17359 37
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C4orf45 37
  • 36 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C4orf45 37
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499643 36
  • 74.17 (n)
  • 63.75 (a)
chicken
(Gallus gallus)
Aves C4H4ORF45 36
  • 52.67 (n)
  • 41.98 (a)
C4orf45 37
  • 28 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100493543 36
  • 52.31 (n)
  • 40.97 (a)
Species with no ortholog for C4orf45:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C4orf45 Gene

ENSEMBL:
Gene Tree for C4orf45 (if available)
TreeFam:
Gene Tree for C4orf45 (if available)

Paralogs for C4orf45 Gene

No data available for Paralogs for C4orf45 Gene

Variants for C4orf45 Gene

Sequence variations from dbSNP and Humsavar for C4orf45 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs109119 -- 158,991,688(-) TTCTA(C/T)GCTTT intron-variant
rs471982 -- 158,966,705(-) ACTCT(C/T)GTTAA intron-variant
rs472067 -- 158,993,729(+) CAtca(C/T)ctgga intron-variant
rs474719 -- 158,967,010(+) CCAAA(C/T)GCATT intron-variant
rs476607 -- 159,022,544(+) GCATC(A/G)CAGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C4orf45 Gene

Variant ID Type Subtype PubMed ID
nsv830127 CNV Loss 17160897
nsv830128 CNV Gain 17160897
nsv4571 CNV Loss 18451855

Relevant External Links for C4orf45 Gene

HapMap Linkage Disequilibrium report
C4orf45

Disorders for C4orf45 Gene

Relevant External Links for C4orf45

Genetic Association Database (GAD)
C4orf45
Human Genome Epidemiology (HuGE) Navigator
C4orf45
genes like me logo Genes that share disorders with C4orf45: view

No data available for UniProtKB/Swiss-Prot for C4orf45 Gene

Publications for C4orf45 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for C4orf45 Gene

Sources for C4orf45 Gene

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