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C4orf36 Gene

protein-coding   GIFtS: 43
GCID: GC04M087797

Chromosome 4 Open Reading Frame 36

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): antisense

Quality score for the ORGUL clustered with this gene is 3

Aliases
Chromosome 4 Open Reading Frame 361 2
Uncharacterized Protein C4orf362

External Ids:    HGNC: 283861   Entrez Gene: 1329892   Ensembl: ENSG000001636337   UniProtKB: Q96KX13   
ORGUL members:         

Export aliases for C4orf36 gene to outside databases

Previous GC identifers: GC04M088016 GC04M083543


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C4orf36 Gene:
C4orf36 (chromosome 4 open reading frame 36) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C4orf36 gene promoter:
         S8   p53   POU2F1   POU2F1a   Chx10   CUTL1   E4BP4   YY1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for C4orf36

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C4orf36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q21.3   Ensembl cytogenetic band:  4q21.3   HGNC cytogenetic band: 4q21.3

C4orf36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C4orf36 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M087797:  view genomic region     (about GC identifiers)

Start:
87,797,358 bp from pter      End:
87,857,354 bp from pter
Size:
59,997 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CD036_HUMAN, Q96KX1 (See protein sequence)
Recommended Name: Uncharacterized protein C4orf36  
Size: 117 amino acids; 13276 Da

Explore the universe of human proteins at neXtProt for C4orf36: NX_Q96KX1

Explore proteomics data for C4orf36 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See C4orf36 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_653246.1  
    ENSEMBL proteins: 
     ENSP00000295898   ENSP00000420949   ENSP00000421568   ENSP00000421141   ENSP00000427122  
     ENSP00000422720  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR027825 DUF4522

    Graphical View of Domain Structure for InterPro Entry Q96KX1

    ProtoNet protein and cluster: Q96KX1


    Find genes that share domains with C4orf36           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         1 GenomeRNAi human phenotype for C4orf36:
     Increased gamma-H2AX phosphory 

    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular2
    mitochondrion2
    cytosol1
    nucleus1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C4orf36
    Interactions:

        Search GeneGlobe Interaction Network for C4orf36

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for C4orf36 (ENSP000002958984) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KNCNENSP000003796074STRING: ENSP00000379607
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C4orf36 (CD036)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for C4orf36 gene: 
    NM_144645.3  

    Unigene Cluster for C4orf36:

    Chromosome 4 open reading frame 36
    Hs.339646  [show with all ESTs]
    Unigene Representative Sequence: BQ215148
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000295898(uc003hqe.4) ENST00000473559 ENST00000462714 ENST00000506308
    ENST00000512468 ENST00000504008 ENST00000503001 ENST00000504371 ENST00000508280(uc003hqf.1)
    ENST00000506484 ENST00000509262 ENST00000503159
    miRNA
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat C4orf36
      QuantiFast Probe-based Assays in human, mouse, rat C4orf36

    Additional mRNA sequence: BC016746.1 

    4 DOTS entries:

    DT.40131930  DT.95335326  DT.121271687  DT.121271694 

    Selected AceView cDNA sequences (see all 60):

    BU790044 BU790343 CR607080 CD364809 BU622986 AA700107 CR613732 BX360317 
    BI767656 BX104678 AL711278 AI990364 BI559460 BF792739 BM508178 BG119295 
    BC063410 BX356037 BG721311 NM_144645 BM510359 AW237518 BM978572 BX090513 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for C4orf36    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6
    SP1:        -     -                 -                                             
    SP2:              -                                                               
    SP3:                                -     -                             -         
    SP4:                                -     -                                       


    ECgene alternative splicing isoforms for C4orf36

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: GCGTATGGAG

    C4orf36 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C4orf36 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.339646
        Custom PCR Arrays for C4orf36
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C4orf36

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for C4orf36 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia 1700016H13Rik1 , 5 RIKEN cDNA 1700016H13 gene1, 5 71.79(n)1
    64.1(a)1
      5 (50.45 cM)5
    742181  NM_001163550.11  NP_001157022.11 
     1036480395 


    ENSEMBL Gene Tree for C4orf36 (if available)
    TreeFam Gene Tree for C4orf36 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for C4orf36 (see all 378)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs623056371,2
    C,F--87796974(+) GCTGGC/GATTAC 1 -- int13Minor allele frequency- G:0.17NA WA 6
    rs1121726441,2
    F--87796984(+) CAGGCG/ATAAGC 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs131093531,2
    C--87797039(+) TATTTA/GAAATA 1 -- int112Minor allele frequency- G:0.02NA WA CSA EA 373
    rs1395655821,2
    --87797139(+) CAAAAC/GCAGCC 1 -- int10--------
    rs119401701,2
    C,F,H--87797249(+) tgagaC/Atcact 1 -- int11Minor allele frequency- A:0.00NA 2
    rs13749351,2
    C,F,A,H--87797861(-) ATAGTA/GAAGAT 1 -- int18Minor allele frequency- G:0.49MN NA WA EA 550
    rs125043271,2
    C,F,H--87797875(+) GAATTT/GAGGAA 1 -- int18Minor allele frequency- G:0.01NS EA NA 584
    rs1476202101,2
    --87797878(+) TTTAGG/TAAAGT 1 -- int10--------
    rs286077551,2
    F--87797930(+) TTGCAA/TTTTTA 1 -- int12Minor allele frequency- T:0.09NA 122
    rs723494711,2
    C--87797940(+) AAAAT-/AAAAAAA 1 -- int10--------

    HapMap Linkage Disequilibrium report for C4orf36 (87797358 - 87857354 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for C4orf36:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv508297CNV Loss20534489

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing C4orf36
    DNA2.0 Custom Variant and Variant Library Synthesis for C4orf36

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with C4orf36           About GenesLikeMe

    Genetic Association Database (GAD): C4orf36
    Human Genome Epidemiology (HuGE) Navigator: C4orf36 (1 document)

    Export disorders for C4orf36 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C4orf36 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with C4orf36)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    4. Genetic variants associated with disordered eating. (PubMed id 23568457)1 Wade T.D....Martin N.G. (Int J Eat Disord 2013)
    5. A high-density genome-wide association screen of sporadic ALS in US veterans. (PubMed id 22470424)4 Kwee L.C....Hauser M.A. (PLoS ONE 2012)
    6. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PubMed id 17903301)4 Vasan R.S....Benjamin E.J. (BMC Med. Genet. 2007)
    7. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (Genome Res. 2004)
    8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 132989 HGNC: 28386 AceView: MGC26744 Ensembl:ENSG00000163633 euGenes: HUgn132989
    ECgene: C4orf36 H-InvDB: C4orf36

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C4orf36 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for C4orf36 gene:
    Search GeneIP for patents involving C4orf36

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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