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Aliases for C4orf3 Gene

Aliases for C4orf3 Gene

  • Chromosome 4 Open Reading Frame 3 2 3
  • HCV F-Transactivated Protein 1 2 4
  • Hepatitis C Virus F Protein-Transactivated Protein 1 4

External Ids for C4orf3 Gene

Summaries for C4orf3 Gene

GeneCards Summary for C4orf3 Gene

C4orf3 (Chromosome 4 Open Reading Frame 3) is a Protein Coding gene. Diseases associated with C4orf3 include hepatitis c virus and hepatitis c.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf3 Gene

Genomics for C4orf3 Gene

Genomic Location for C4orf3 Gene

Start:
119,296,419 bp from pter
End:
119,304,445 bp from pter
Size:
8,027 bases
Orientation:
Minus strand

Genomic View for C4orf3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf3 Gene

Regulatory Elements for C4orf3 Gene

Proteins for C4orf3 Gene

  • Protein details for C4orf3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WVX3-CD003_HUMAN
    Recommended name:
    Uncharacterized protein C4orf3
    Protein Accession:
    Q8WVX3
    Secondary Accessions:
    • Q6J203

    Protein attributes for C4orf3 Gene

    Size:
    66 amino acids
    Molecular mass:
    7604 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C4orf3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C4orf3 Gene

Proteomics data for C4orf3 Gene at MOPED

Post-translational modifications for C4orf3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C4orf3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C4orf3 Gene

Domains for C4orf3 Gene

Protein Domains for C4orf3 Gene

ProtoNet:
genes like me logo Genes that share domains with C4orf3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C4orf3 Gene

Function for C4orf3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C4orf3 Gene

Localization for C4orf3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C4orf3 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf3 Gene COMPARTMENTS Subcellular localization image for C4orf3 gene
Compartment Confidence
plasma membrane 3
cytosol 1
extracellular 1
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C4orf3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C4orf3: view

Pathways for C4orf3 Gene

SuperPathways for C4orf3 Gene

No Data Available

Interacting Proteins for C4orf3 Gene

Gene Ontology (GO) - Biological Process for C4orf3 Gene

None

No data available for Pathways by source for C4orf3 Gene

Transcripts for C4orf3 Gene

Unigene Clusters for C4orf3 Gene

Chromosome 4 open reading frame 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf3 Gene

No ASD Table

Relevant External Links for C4orf3 Gene

GeneLoc Exon Structure for
C4orf3
ECgene alternative splicing isoforms for
C4orf3

Expression for C4orf3 Gene

mRNA expression in normal human tissues for C4orf3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C4orf3 Gene

SOURCE GeneReport for Unigene cluster for C4orf3 Gene Hs.173705

genes like me logo Genes that share expressions with C4orf3: view

Orthologs for C4orf3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C4orf3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4orf3 37
  • 98 (a)
OneToOne
LOC461458 36
  • 98.83 (n)
  • 97.99 (a)
cow
(Bos Taurus)
Mammalia C4orf3 37
  • 72 (a)
OneToOne
C6H4orf3 36
  • 67.66 (n)
  • 63.37 (a)
dog
(Canis familiaris)
Mammalia C4orf3 37
  • 66 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1810037I17Rik 16
1810037I17Rik 37
  • 69 (a)
OneToOne
Species with no ortholog for C4orf3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C4orf3 Gene

ENSEMBL:
Gene Tree for C4orf3 (if available)
TreeFam:
Gene Tree for C4orf3 (if available)

Paralogs for C4orf3 Gene

Pseudogenes.org Pseudogenes for C4orf3 Gene

genes like me logo Genes that share paralogs with C4orf3: view

No data available for Paralogs for C4orf3 Gene

Variants for C4orf3 Gene

Sequence variations from dbSNP and Humsavar for C4orf3 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1397611 -- 119,304,193(-) GAAGG(A/G)AATTT intron-variant
rs1858285 -- 119,306,264(-) CCACA(C/T)TCCCT upstream-variant-2KB
rs4834767 -- 119,303,410(+) TTGTA(C/T)TTTTA intron-variant
rs6822808 -- 119,296,210(+) CTTGG(A/C)GTTCC downstream-variant-500B
rs6843509 -- 119,299,041(+) TTATA(A/G)AAATC intron-variant

Relevant External Links for C4orf3 Gene

HapMap Linkage Disequilibrium report
C4orf3

No data available for Structural Variations from Database of Genomic Variants (DGV) for C4orf3 Gene

Disorders for C4orf3 Gene

Relevant External Links for C4orf3

Genetic Association Database (GAD)
C4orf3
Human Genome Epidemiology (HuGE) Navigator
C4orf3
genes like me logo Genes that share disorders with C4orf3: view

No data available for UniProtKB/Swiss-Prot for C4orf3 Gene

Publications for C4orf3 Gene

  1. Screening and cloning target genes transactivated by hepatitis C virus F protein using suppression subtractive hybridization technique. (PMID: 16174453) Guo J. … Wu S.H. (Zhonghua Gan Zang Bing Za Zhi 2005) 3 4
  2. A systematic gene-based screen of chr4q22-q32 identifies association of a novel susceptibility gene, DKK2, with the quantitative trait of alcohol dependence symptom counts. (PMID: 20332099) Kalsi G. … Riley B.P. (Hum. Mol. Genet. 2010) 3 49
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  5. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PMID: 22814378) Van Damme P. … Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012) 4

Products for C4orf3 Gene

Sources for C4orf3 Gene

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