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Aliases for C4orf29 Gene

Aliases for C4orf29 Gene

  • Chromosome 4 Open Reading Frame 29 2 3

External Ids for C4orf29 Gene

Previous GeneCards Identifiers for C4orf29 Gene

  • GC04P129105
  • GC04P128886
  • GC04P124618

Summaries for C4orf29 Gene

GeneCards Summary for C4orf29 Gene

C4orf29 (Chromosome 4 Open Reading Frame 29) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf29 Gene

Genomics for C4orf29 Gene

Regulatory Elements for C4orf29 Gene

Genomic Location for C4orf29 Gene

Start:
127,965,256 bp from pter
End:
128,039,711 bp from pter
Size:
74,456 bases
Orientation:
Plus strand

Genomic View for C4orf29 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf29 Gene

Proteins for C4orf29 Gene

  • Protein details for C4orf29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q0P651-CD029_HUMAN
    Recommended name:
    Uncharacterized protein C4orf29
    Protein Accession:
    Q0P651
    Secondary Accessions:
    • A1A4W8
    • A1A4W9
    • Q9H7A7

    Protein attributes for C4orf29 Gene

    Size:
    414 amino acids
    Molecular mass:
    46954 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C4orf29 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C4orf29 Gene

Proteomics data for C4orf29 Gene at MOPED

Post-translational modifications for C4orf29 Gene

  • Ubiquitination at Lys253
  • Glycosylation at Asn282 and Asn307
  • Modification sites at PhosphoSitePlus

Other Protein References for C4orf29 Gene

No data available for DME Specific Peptides for C4orf29 Gene

Domains for C4orf29 Gene

Protein Domains for C4orf29 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C4orf29: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C4orf29 Gene

Function for C4orf29 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C4orf29 Gene

Localization for C4orf29 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C4orf29 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf29 Gene COMPARTMENTS Subcellular localization image for C4orf29 gene
Compartment Confidence
extracellular 3
mitochondrion 2
nucleus 2
cytosol 1
endoplasmic reticulum 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C4orf29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C4orf29: view

Pathways for C4orf29 Gene

SuperPathways for C4orf29 Gene

No Data Available

Interacting Proteins for C4orf29 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000381937%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000381937 Q0P651-CD029_HUMAN for C4orf29 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C4orf29 Gene

None

No data available for Pathways by source for C4orf29 Gene

Transcripts for C4orf29 Gene

Unigene Clusters for C4orf29 Gene

Chromosome 4 open reading frame 29:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C4orf29

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C4orf29

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf29 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12
SP1:
SP2: -
SP3:
SP4:

Relevant External Links for C4orf29 Gene

GeneLoc Exon Structure for
C4orf29
ECgene alternative splicing isoforms for
C4orf29

Expression for C4orf29 Gene

mRNA expression in normal human tissues for C4orf29 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C4orf29 Gene

SOURCE GeneReport for Unigene cluster for C4orf29 Gene Hs.445817

genes like me logo Genes that share expressions with C4orf29: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C4orf29 Gene

Orthologs for C4orf29 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C4orf29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4H4orf29 35
  • 99.68 (n)
  • 99.28 (a)
C4orf29 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MGC165715 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C19H4orf29 35
  • 93.24 (n)
  • 94.44 (a)
C4orf29 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 3110057O12Rik 35
  • 88.81 (n)
  • 90.58 (a)
3110057O12Rik 16
3110057O12Rik 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C4orf29 36
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C4orf29 36
  • 71 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499602 35
  • 88.33 (n)
  • 91.3 (a)
chicken
(Gallus gallus)
Aves C4H4ORF29 35
  • 75.65 (n)
  • 76.46 (a)
C4H4ORF29 36
  • 59 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C4orf29 36
  • 71 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC68853 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9375 35
zebrafish
(Danio rerio)
Actinopterygii C14H4orf29 36
  • 62 (a)
OneToOne
wufk51f04 35
zgc:110741 35
  • 65.07 (n)
  • 72.73 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003371 35
  • 57.68 (n)
  • 62.42 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32112 35
  • 53.28 (n)
  • 51.58 (a)
CG32112 36
  • 40 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C54G4.7 35
  • 48.26 (n)
  • 39.83 (a)
C54G4.7 36
  • 33 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G12150 35
  • 44.48 (n)
  • 33.14 (a)
rice
(Oryza sativa)
Liliopsida Os02g0195000 35
  • 44.78 (n)
  • 37.61 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 39 (a)
OneToOne
Species with no ortholog for C4orf29:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for C4orf29 Gene

ENSEMBL:
Gene Tree for C4orf29 (if available)
TreeFam:
Gene Tree for C4orf29 (if available)

Paralogs for C4orf29 Gene

No data available for Paralogs for C4orf29 Gene

Variants for C4orf29 Gene

Sequence variations from dbSNP and Humsavar for C4orf29 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs404882 -- 127,973,716(+) ttgaa(A/G)aaata intron-variant
rs413343 -- 128,027,824(-) ATGAT(C/T)TGCCT intron-variant
rs447300 -- 127,978,478(-) CTGTA(C/T)GCTTA intron-variant
rs450264 -- 128,027,434(-) agtga(A/G)actcc intron-variant
rs516804 -- 127,969,189(+) GTTTT(C/T)ttttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C4orf29 Gene

Variant ID Type Subtype PubMed ID
nsv879915 CNV Gain 21882294
dgv5711n71 CNV Loss 21882294
nsv879923 CNV Loss 21882294

Relevant External Links for C4orf29 Gene

HapMap Linkage Disequilibrium report
C4orf29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C4orf29 Gene

Disorders for C4orf29 Gene

No disorders were found for C4orf29 Gene.

No data available for UniProtKB/Swiss-Prot for C4orf29 Gene

Publications for C4orf29 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C4orf29 Gene

Sources for C4orf29 Gene

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