Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C4orf17 Gene

Aliases for C4orf17 Gene

  • Chromosome 4 Open Reading Frame 17 2 3

External Ids for C4orf17 Gene

Summaries for C4orf17 Gene

GeneCards Summary for C4orf17 Gene

C4orf17 (Chromosome 4 Open Reading Frame 17) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4orf17 Gene

Genomics for C4orf17 Gene

Genomic Location for C4orf17 Gene

Start:
99,511,004 bp from pter
End:
99,542,303 bp from pter
Size:
31,300 bases
Orientation:
Plus strand

Genomic View for C4orf17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C4orf17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C4orf17 Gene

Regulatory Elements for C4orf17 Gene

Proteins for C4orf17 Gene

  • Protein details for C4orf17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53FE4-CD017_HUMAN
    Recommended name:
    Uncharacterized protein C4orf17
    Protein Accession:
    Q53FE4
    Secondary Accessions:
    • Q6FI84
    • Q6IS77
    • Q8NA78
    • Q9H0D9

    Protein attributes for C4orf17 Gene

    Size:
    359 amino acids
    Molecular mass:
    39644 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C4orf17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C4orf17 Gene

Proteomics data for C4orf17 Gene at MOPED

Post-translational modifications for C4orf17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C4orf17 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C4orf17 Gene

Domains for C4orf17 Gene

Protein Domains for C4orf17 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C4orf17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C4orf17: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C4orf17 Gene

Function for C4orf17 Gene

Phenotypes for C4orf17 Gene

genes like me logo Genes that share phenotypes with C4orf17: view

miRNA for C4orf17 Gene

miRTarBase miRNAs that target C4orf17

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C4orf17 Gene

Localization for C4orf17 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C4orf17 Gene COMPARTMENTS Subcellular localization image for C4orf17 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C4orf17 Gene

Pathways for C4orf17 Gene

SuperPathways for C4orf17 Gene

No Data Available

Interacting Proteins for C4orf17 Gene

Selected Interacting proteins: Q53FE4-CD017_HUMAN for C4orf17 Gene via I2D

Gene Ontology (GO) - Biological Process for C4orf17 Gene

None

No data available for Pathways by source for C4orf17 Gene

Transcripts for C4orf17 Gene

mRNA/cDNA for C4orf17 Gene

Unigene Clusters for C4orf17 Gene

Chromosome 4 open reading frame 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C4orf17 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1: -
SP2: - -
SP3:
SP4: - -

Relevant External Links for C4orf17 Gene

GeneLoc Exon Structure for
C4orf17
ECgene alternative splicing isoforms for
C4orf17

Expression for C4orf17 Gene

mRNA expression in normal human tissues for C4orf17 Gene

mRNA differential expression in normal tissues according to GTEx for C4orf17 Gene

This gene is overexpressed in Testis (51.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C4orf17 Gene

SOURCE GeneReport for Unigene cluster for C4orf17 Gene Hs.97501

genes like me logo Genes that share expressions with C4orf17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C4orf17 Gene

Orthologs for C4orf17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C4orf17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4H4orf17 35
  • 99.26 (n)
  • 98.61 (a)
C4orf17 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C4orf17 36
  • 76 (a)
OneToOne
C6H4orf17 35
  • 84.58 (n)
  • 76.15 (a)
dog
(Canis familiaris)
Mammalia C32H4orf17 35
  • 84.37 (n)
  • 76.7 (a)
C4orf17 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930579F01Rik 35
  • 70.85 (n)
  • 58.42 (a)
4930579F01Rik 16
4930579F01Rik 36
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C4orf17 36
  • 46 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309170 35
  • 73.12 (n)
  • 60.57 (a)
lizard
(Anolis carolinensis)
Reptilia C4orf17 36
  • 28 (a)
OneToOne
Species with no ortholog for C4orf17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C4orf17 Gene

ENSEMBL:
Gene Tree for C4orf17 (if available)
TreeFam:
Gene Tree for C4orf17 (if available)

Paralogs for C4orf17 Gene

No data available for Paralogs for C4orf17 Gene

Variants for C4orf17 Gene

Sequence variations from dbSNP and Humsavar for C4orf17 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs867380 -- 99,530,360(-) TGCAA(A/G)GAAAA intron-variant
rs867381 -- 99,530,230(-) AGATG(A/G)AAAGA intron-variant
rs883028 -- 99,530,218(-) TAGGG(C/T)TGGGT intron-variant
rs884274 -- 99,529,536(+) ATCTG(A/G)AACTG intron-variant
rs884275 -- 99,529,555(+) AAGGT(C/T)ATACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C4orf17 Gene

Variant ID Type Subtype PubMed ID
nsv879656 CNV Gain 21882294

Relevant External Links for C4orf17 Gene

HapMap Linkage Disequilibrium report
C4orf17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C4orf17 Gene

Disorders for C4orf17 Gene

Relevant External Links for C4orf17

Human Genome Epidemiology (HuGE) Navigator
C4orf17
genes like me logo Genes that share disorders with C4orf17: view

No data available for UniProtKB/Swiss-Prot for C4orf17 Gene

Publications for C4orf17 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for C4orf17 Gene

Sources for C4orf17 Gene

Back to Top

Content