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Aliases for C3orf84 Gene

Aliases for C3orf84 Gene

  • Chromosome 3 Open Reading Frame 84 2 3

External Ids for C3orf84 Gene

Summaries for C3orf84 Gene

GeneCards Summary for C3orf84 Gene

C3orf84 (Chromosome 3 Open Reading Frame 84) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf84 Gene

Genomics for C3orf84 Gene

Genomic Location for C3orf84 Gene

Start:
49,177,632 bp from pter
End:
49,191,858 bp from pter
Size:
14,227 bases
Orientation:
Minus strand

Genomic View for C3orf84 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C3orf84 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf84 Gene

No data available for Regulatory Elements for C3orf84 Gene

Proteins for C3orf84 Gene

  • Protein details for C3orf84 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BNL1-CC084_HUMAN
    Recommended name:
    Uncharacterized protein C3orf84
    Protein Accession:
    H3BNL1
    Secondary Accessions:

    Protein attributes for C3orf84 Gene

    Size:
    204 amino acids
    Molecular mass:
    23376 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C3orf84 Gene

Proteomics data for C3orf84 Gene at MOPED

Post-translational modifications for C3orf84 Gene

No Post-translational modifications

Other Protein References for C3orf84 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C3orf84 Gene

Domains for C3orf84 Gene

Protein Domains for C3orf84 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C3orf84: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C3orf84 Gene

Function for C3orf84 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C3orf84 Gene

Localization for C3orf84 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C3orf84 Gene

Pathways for C3orf84 Gene

SuperPathways for C3orf84 Gene

No Data Available

Interacting Proteins for C3orf84 Gene

Gene Ontology (GO) - Biological Process for C3orf84 Gene

None

No data available for Pathways by source for C3orf84 Gene

Transcripts for C3orf84 Gene

mRNA/cDNA for C3orf84 Gene

(5) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf84

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C3orf84
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf84 Gene

No ASD Table

Relevant External Links for C3orf84 Gene

GeneLoc Exon Structure for
C3orf84
ECgene alternative splicing isoforms for
C3orf84

Expression for C3orf84 Gene

mRNA expression in normal human tissues for C3orf84 Gene

mRNA differential expression in normal tissues according to GTEx for C3orf84 Gene

This gene is overexpressed in Testis (51.7).
genes like me logo Genes that share expressions with C3orf84: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C3orf84 Gene

Orthologs for C3orf84 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C3orf84 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MGC137053 35
  • 87.52 (n)
  • 83.74 (a)
MGC137053 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C3orf84 36
  • 85 (a)
OneToOne
LOC608863 35
  • 89.28 (n)
  • 84.42 (a)
mouse
(Mus musculus)
Mammalia BC048562 35
  • 83.5 (n)
  • 78.43 (a)
BC048562 16
BC048562 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C3orf84 36
  • 41 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC680045 35
  • 82.01 (n)
  • 76.73 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485425 35
  • 44.8 (n)
  • 35.45 (a)
Species with no ortholog for C3orf84:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C3orf84 Gene

ENSEMBL:
Gene Tree for C3orf84 (if available)
TreeFam:
Gene Tree for C3orf84 (if available)

Paralogs for C3orf84 Gene

No data available for Paralogs for C3orf84 Gene

Variants for C3orf84 Gene

Sequence variations from dbSNP and Humsavar for C3orf84 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs4367098 -- 49,182,236(-) taaaa(A/G)caggc intron-variant
rs4541435 -- 49,191,068(-) ACAGA(A/G)TGTAC intron-variant
rs4955421 -- 49,181,455(+) agacc(A/G)gcctg intron-variant
rs4955423 -- 49,183,015(+) cccgc(A/G)agctg intron-variant
rs6446256 -- 49,186,777(+) aacta(A/G)ggaaa intron-variant

Relevant External Links for C3orf84 Gene

HapMap Linkage Disequilibrium report
C3orf84

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C3orf84 Gene

Disorders for C3orf84 Gene

No disorders were found for C3orf84 Gene.

No data available for UniProtKB/Swiss-Prot for C3orf84 Gene

Publications for C3orf84 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for C3orf84 Gene

Sources for C3orf84 Gene

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