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C3orf67-AS1 Gene(RNA Gene)

C3orf67 Antisense RNA 1

GCID:
GC03P058824
GIFtS:
12
Genes Participants
UDN Logo

Aliases for C3orf67-AS1 Gene

Subcategory (RNA class) for C3orf67-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C3orf67-AS1 Gene

  • C3orf67 Antisense RNA 1 2 3 5

External Ids for C3orf67-AS1 Gene

Summaries for C3orf67-AS1 Gene

GeneCards Summary for C3orf67-AS1 Gene

C3orf67-AS1 (C3orf67 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C3orf67-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf67-AS1 Gene

Genomics for C3orf67-AS1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for C3orf67-AS1 Gene

Promoters and enhancers for C3orf67-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH03I058996 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +174.4 174407 4.1 HDGF HDAC1 PKNOX1 ATF1 TAF9B NFRKB ZBTB40 CHAMP1 FOS ATF7 C3orf67 C3orf67-AS1 PIR52028
GH03I058994 Enhancer 0.8 Ensembl dbSUPER 11.2 +170.6 170559 0.4 CTCF ZNF654 TRIM22 REST RAD21 ATF2 YY1 FOXK2 ARID2 ZNF512 C3orf67 C3orf67-AS1 PIR52028
GH03I058693 Enhancer 0.7 ENCODE dbSUPER 10.5 -130.3 -130267 0.6 ZNF687 NR2F1 IKZF1 ELF1 DPF2 RUNX3 SPI1 FAM3D C3orf67-AS1 FAM107A PXK GC03P058659 LOC105377109
GH03I058640 Enhancer 0.7 Ensembl 9.7 -183.6 -183557 0.6 CTCF RB1 RAD21 CC2D1A PATZ1 VEZF1 SMC3 ZNF143 KLF8 CREM FAM3D-AS1 FAM3D ENSG00000243384 C3orf67-AS1 GC03M058625 FAM107A
GH03I058989 Enhancer 0.6 ENCODE dbSUPER 10.9 +164.9 164853 0.2 JUND JUN C3orf67-AS1 C3orf67 PIR52028
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C3orf67-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C3orf67-AS1 Gene

Genomic Locations for C3orf67-AS1 Gene
chr3:58,824,437-59,019,093
(GRCh38/hg38)
Size:
194,657 bases
Orientation:
Plus strand
chr3:58,810,163-59,004,819
(GRCh37/hg19)

Genomic View for C3orf67-AS1 Gene

Genes around C3orf67-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C3orf67-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C3orf67-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for C3orf67-AS1 Gene

Proteins for C3orf67-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for C3orf67-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C3orf67-AS1 Gene

Domains & Families for C3orf67-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C3orf67-AS1 Gene

Function for C3orf67-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C3orf67-AS1 Gene

Localization for C3orf67-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C3orf67-AS1 Gene

Pathways & Interactions for C3orf67-AS1 Gene

SuperPathways for C3orf67-AS1 Gene

PathCards logo More details on SuperPathways for C3orf67-AS1
No Data Available

Interacting Proteins for C3orf67-AS1 Gene

Gene Ontology (GO) - Biological Process for C3orf67-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C3orf67-AS1 Gene

Drugs & Compounds for C3orf67-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for C3orf67-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for C3orf67-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf67-AS1 Gene

No ASD Table

Relevant External Links for C3orf67-AS1 Gene

GeneLoc Exon Structure for
C3orf67-AS1
ECgene alternative splicing isoforms for
C3orf67-AS1

Expression for C3orf67-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C3orf67-AS1 Gene

mRNA expression in normal human tissues for C3orf67-AS1 Gene
mRNA expression by GTEx for C3orf67-AS1 Gene
genes like me logo Genes that share expression patterns with C3orf67-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C3orf67-AS1 Gene

Orthologs for C3orf67-AS1 Gene

Evolution for C3orf67-AS1 Gene

ENSEMBL:
Gene Tree for C3orf67-AS1 (if available)
TreeFam:
Gene Tree for C3orf67-AS1 (if available)

No data available for Orthologs for C3orf67-AS1 Gene

Paralogs for C3orf67-AS1 Gene

No data available for Paralogs for C3orf67-AS1 Gene

Variants for C3orf67-AS1 Gene

Sequence variations from dbSNP and Humsavar for C3orf67-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000009518 -- 58,949,852(+) A/G intron_variant
rs1000017724 -- 58,988,410(+) C/T intron_variant
rs1000025604 -- 59,004,764(+) A/G intron_variant
rs1000033020 -- 58,847,538(+) G/C intron_variant
rs1000041920 -- 58,970,905(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C3orf67-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4749n100 CNV gain 25217958
esv2763270 CNV loss 21179565
esv3305385 CNV mobile element insertion 20981092
esv3345190 CNV insertion 20981092
esv3596258 CNV loss 21293372
esv3596261 CNV loss 21293372
esv3893702 CNV loss 25118596
nsv1002940 CNV gain 25217958
nsv472555 CNV novel sequence insertion 20440878
nsv511230 CNV loss 21212237
nsv834704 CNV loss 17160897
nsv997365 CNV loss 25217958

Additional Variant Information for C3orf67-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C3orf67-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C3orf67-AS1 Gene

Disorders for C3orf67-AS1 Gene

Additional Disease Information for C3orf67-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for C3orf67-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C3orf67-AS1 Gene

Publications for C3orf67-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for C3orf67-AS1 Gene

Sources for C3orf67-AS1 Gene

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