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Aliases for C3orf56 Gene

Aliases for C3orf56 Gene

  • Chromosome 3 Open Reading Frame 56 2 3

External Ids for C3orf56 Gene

Summaries for C3orf56 Gene

GeneCards Summary for C3orf56 Gene

C3orf56 (Chromosome 3 Open Reading Frame 56) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf56 Gene

Genomics for C3orf56 Gene

Genomic Location for C3orf56 Gene

Start:
127,193,131 bp from pter
End:
127,198,185 bp from pter
Size:
5,055 bases
Orientation:
Plus strand

Genomic View for C3orf56 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C3orf56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf56 Gene

Regulatory Elements for C3orf56 Gene

Proteins for C3orf56 Gene

  • Protein details for C3orf56 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N813-CC056_HUMAN
    Recommended name:
    Putative uncharacterized protein C3orf56
    Protein Accession:
    Q8N813
    Secondary Accessions:
    • B2RNW5

    Protein attributes for C3orf56 Gene

    Size:
    242 amino acids
    Molecular mass:
    26007 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C3orf56 Gene

Proteomics data for C3orf56 Gene at MOPED

Post-translational modifications for C3orf56 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C3orf56 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C3orf56 Gene

Domains for C3orf56 Gene

Protein Domains for C3orf56 Gene

ProtoNet:
genes like me logo Genes that share domains with C3orf56: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C3orf56 Gene

Function for C3orf56 Gene

Phenotypes for C3orf56 Gene

GenomeRNAi human phenotypes for C3orf56:
genes like me logo Genes that share phenotypes with C3orf56: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C3orf56 Gene

Localization for C3orf56 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C3orf56 Gene COMPARTMENTS Subcellular localization image for C3orf56 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for C3orf56 Gene

Pathways for C3orf56 Gene

SuperPathways for C3orf56 Gene

No Data Available

Interacting Proteins for C3orf56 Gene

Gene Ontology (GO) - Biological Process for C3orf56 Gene

None

No data available for Pathways by source for C3orf56 Gene

Transcripts for C3orf56 Gene

mRNA/cDNA for C3orf56 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C3orf56 Gene

Chromosome 3 open reading frame 56:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf56 Gene

No ASD Table

Relevant External Links for C3orf56 Gene

GeneLoc Exon Structure for
C3orf56
ECgene alternative splicing isoforms for
C3orf56

Expression for C3orf56 Gene

mRNA expression in normal human tissues for C3orf56 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C3orf56 Gene

This gene is overexpressed in Testis (38.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C3orf56 Gene

SOURCE GeneReport for Unigene cluster for C3orf56 Gene Hs.591284

genes like me logo Genes that share expressions with C3orf56: view

Orthologs for C3orf56 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C3orf56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf56 37
  • 98 (a)
OneToOne
LOC736473 36
  • 98.76 (n)
  • 97.93 (a)
Species with no ortholog for C3orf56:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C3orf56 Gene

ENSEMBL:
Gene Tree for C3orf56 (if available)
TreeFam:
Gene Tree for C3orf56 (if available)

Paralogs for C3orf56 Gene

Pseudogenes.org Pseudogenes for C3orf56 Gene

genes like me logo Genes that share paralogs with C3orf56: view

No data available for Paralogs for C3orf56 Gene

Variants for C3orf56 Gene

Sequence variations from dbSNP and Humsavar for C3orf56 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs977683 -- 127,195,281(-) GAAGA(C/G)AAATG intron-variant
rs4679347 -- 127,197,528(+) TATTC(C/T)TCAGT utr-variant-3-prime
rs4679348 -- 127,198,462(+) GGTGA(C/T)AAGAG downstream-variant-500B
rs6439039 -- 127,193,126(+) TGAGG(C/T)CTCCA upstream-variant-2KB
rs6767107 -- 127,193,428(+) GCTTC(C/T)CTTGC intron-variant

Relevant External Links for C3orf56 Gene

HapMap Linkage Disequilibrium report
C3orf56

No data available for Structural Variations from Database of Genomic Variants (DGV) for C3orf56 Gene

Disorders for C3orf56 Gene

Relevant External Links for C3orf56

Genetic Association Database (GAD)
C3orf56
Human Genome Epidemiology (HuGE) Navigator
C3orf56
genes like me logo Genes that share disorders with C3orf56: view

No data available for UniProtKB/Swiss-Prot for C3orf56 Gene

Publications for C3orf56 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. (PMID: 24025145) Chung S. … Nakamura Y. (Breast Cancer Res. 2013) 3
  3. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. (PMID: 24529757) Xie T. … Xu R. (Neurobiol. Aging 2014) 3
  4. Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease. (PMID: 21116278) Furney S.J. … . (Mol. Psychiatry 2011) 49
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C3orf56 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C3orf56
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf56
    • Block miRNA regulation of C3orf56 using miScript Target Protectors

    Sources for C3orf56 Gene

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