C3orf55 Gene
protein-coding GIFtS: 36
GCID: GC03P157261
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chromosome 3 open reading frame 55
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Aliases
for C3orf55 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Chromosome 3 Open Reading Frame 551 2 | | Putative Uncharacterized Protein C3orf552 |
Export aliases for C3orf55 gene to outside databasesPrevious GC identifers: GC03P158744 GC03P154657 |
Summaries
for C3orf55 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C3orf55 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_005612.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C3orf55 gene promoter:
ER-alpha Sox5 AML1a HSF1 (long) POU6F1 (c2) MEF-2A Nkx6-1 HNF-1 HSF1short aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for C3orf55
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C3orf55 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3q25.32 Ensembl cytogenetic band: 3q25.32 HGNC cytogenetic band: 3q25.32C3orf55 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P157261: view genomic region
(about GC identifiers)
Start:
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157,261,035 bp from pter |
End:
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157,395,538 bp from pter |
Size:
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134,504 bases |
Orientation:
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plus strand |
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Proteins
for C3orf55 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CC055_HUMAN, A1A4F0 (See
protein sequence)Recommended Name: Putative uncharacterized protein C3orf55 Size: 135 amino acids; 15626 Da
Sequence caution: Sequence=AAH29129.1; Type=Erroneous translation; Note=Wrong choice of CDS;
Secondary accessions: C9JP04 C9JXB5 Q8N6Q6Alternative splicing: 4 isoforms: A1A4F0-1 A1A4F0-2 A1A4F0-3 A1A4F0-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for C3orf55: NX_A1A4F0
C3orf55 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (4 alternative transcripts):
NP_001093247.1 NP_001123473.1 NP_001123474.1 NP_001230658.1
ENSEMBL proteins: ENSP00000312323 ENSP00000420049 ENSP00000420317 ENSP00000417372 ENSP00000413228 ENSP00000387918
Human Recombinant Protein Products:
C3orf55 Antibody Products:
Assay Products for C3orf55: |
Protein
Domains /
Families
for C3orf55 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: A1A4F0 |
Function
for C3orf55 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C3orf55 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C3orf55 (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for C3orf55 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C3orf55 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf55 |
1 GenomeRNAi human phenotype for C3orf55:
|
Pathways & Interactions
for C3orf55 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C3orf55
STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)
4 Interacting proteins for C3orf55 (ENSP000004132284) via UniProtKB, MINT, STRING, and/or I2DAbout this table
|
Drugs & Compounds
for C3orf55 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C3orf55
Search CenterWatch for drugs/clinical trials and news about C3orf55 / CC055
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Transcripts
for C3orf55 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C3orf55 gene (4 alternative transcripts): NM_001099777.3 NM_001130001.2 NM_001130002.2 NM_001243729.1 Unigene Cluster for C3orf55: Chromosome 3 open reading frame 55 Hs.259046 [show with all ESTs]Unigene Representative Sequence: NM_0011300027 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000312275(uc003fbo.3 uc011bot.2) ENST00000498159 ENST00000468043(uc011bos.2)
ENST00000459838 ENST00000461040 ENST00000449199(uc003fbp.4 uc010hvv.3)
ENST00000426338
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C3orf55 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C3orf55 (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 3): C3orf55 (NM_001130002) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C3orf55 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C3orf55 |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C3orf55
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat C3orf55 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C3orf55 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C3orf55 |
Additional cDNA sequence: BC010062.2 BC029129.1 BC126187.1 BC126189.1 BC144066.1 NR_024016.2 6 DOTS entries: DT.92417655 DT.40120463 DT.91718910 DT.100700676 DT.91718922 DT.120899510 24/38 AceView cDNA sequences (see all 38): BU733510 AI348631 BM709511 BI754395 BX113701 BG184770 BM716256 BG199132 CA444904 BF512162 BG200087 BG220009 BG197083 BG215351 AI377021 AA131576 BF026806 BG217991 BC029129 BF446272 BG181950 CD245077 BC010062 BE905784
GeneLoc Exon Structure
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Expression
for C3orf55 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C3orf55 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTTGGAAGA
About this image
See C3orf55 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C3orf55
SOURCE GeneReport for Unigene cluster: Hs.259046
SABiosciences Custom PCR Arrays for C3orf55
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C3orf55
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat C3orf55 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C3orf55 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C3orf55 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf55 |
Orthologs
for C3orf55 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for C3orf55 (if available)
TreeFam Gene Tree for C3orf55 (if available) |
Paralogs
for C3orf55 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for C3orf55 gene
- PQLC22
C3orf55 for paralogs About GeneDecksing
|
Genomic Variants
for C3orf55 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for C3orf55 (157261035 - 157395538 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for C3orf55
1 CNV: 36094 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C3orf55 |
|
Disorders
/ Diseases
for C3orf55 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for C3orf55 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C3orf55 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C3orf55) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Creation of genome-wide protein expression libraries using random activation of gene expression. (PubMed id 11329013)1 Harrington J.J.... Ducar M. (2001)
- Generation and analysis of 280,000 human expressed sequence tags. (PubMed id 8889549)1 Hillier L.D....Marra M. (1996)
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External Searches for C3orf55 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing C3orf55 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C3orf55 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C3orf55 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for C3orf55 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for C3orf55 gene:
Search GeneIP for patents involving C3orf55
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C3orf55 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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| | | | Search Tocris compounds for C3orf55 |
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 | | | C3orf55 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf55 |
|  |  |  | | | | Search ThermoFisher Antibodies for C3orf55 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C3orf55 |
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