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C3orf39 Gene

protein-coding   GIFtS: 41

GC03M043097
chromosome 3 open reading frame 39
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases &
Descriptions
for C3orf39 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
chromosome 3 open reading frame 391 2
AGO611 2
FLJ145661 2
glycosyltransferase2
EC 2.4.-.-3

External Ids:    HGNC: 259021   Entrez Gene: 848922   Ensembl: ENSG000001446477   UniProtKB: Q8NAT13   

Search outside databases for aliases for C3orf39 gene

Summaries
for C3orf39 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Genomic Views
for C3orf39 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC and Ensembl (release 56), Regulatory elements and Epigenetics data according to SABiosciences)
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  User Feedback		 Regulatory elements:
"" SABiosciences Regulatory transcription factor binding sites in the C3orf39 gene upstream (promoter) region "":
RFX1   E47   GATA-1   ER-alpha   Arnt   AhR   c-Myb   C/EBPbeta   E2F-5   E2F-4   

Epigenetics:
"" SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for C3orf39:  ""
MePH04802-2A   

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p22.1   Ensembl cytogenetic band:  3p22.1   HGNC cytogenetic band: 3p22.1

C3orf39 Gene in genomic location: bands according to Ensembl, locations according to "" (and/or Entrez Gene and/or Ensembl if different)
""

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M043097:  view genomic region     (about GC identifiers)

Start:
 43,120,724 bp from pter
End:
 43,147,568 bp from pter
Size:
 26,845 bases
Orientation:
 minus strand
RefSeq DNA sequence:
NC_000003.11  NT_022517.18  

Proteins
for C3orf39 gene

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene, Novus Biologicals, and/or Sino Biological,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 May 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abnova, OriGene, Novus Biologicals, and/or Epitomics)
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  User Feedback		 UniProtKB/Swiss-Prot: AGO61_HUMAN, Q8NAT1 (See protein sequence)
Recommended Name: Uncharacterized glycosyltransferase AGO61 precursor  
Size: 580 amino acids; 66615 Da
Secondary accessions: B3KWC3 Q96SY3

REFSEQ proteins: NP_116195.2  

ENSEMBL proteins: 
ENSP00000344125 ENSP00000408992 


Human Recombinant Proteins 
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Novus Biologicals Lysate for C3orf39
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Antibodies for C3orf39: 
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Assays for C3orf39: 
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Protein Domains/
Families
for C3orf39 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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"" C3orf39 for domains           About GeneDecksing

2 InterPro domains/families:
 IPR008957 Fibronectin_typ-III-like_fold
 IPR007657 Glycosyltransferase_AER61

Graphical View of Domain Structure for InterPro Entry Q8NAT1

ProtoNet protein and cluster: Q8NAT1

UniProtKB/Swiss-Prot: AGO61_HUMAN, Q8NAT1
Similarity: Belongs to the glycosyltransferase 61 family

Gene Function
for C3orf39 gene

(According to MGI May 08 2010, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, Abnova, siRNAs from Applied Biosystems, Sigma-Aldrich, Clones from Millipore, Sigma-Aldrich, OriGene, Sino Biological, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene.)
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Inhib.
RNA:		""Browse for Gene Knock-down Tools from Millipore
""Browse Abnova for Chimera RNAi Products
"" Origene 29mer shRNA kits in GFP-retroviral vector: C3orf39
Origene shRNA RFP: C3orf39
Origene basic RS shRNA: C3orf39

""Applied Biosystems Silencer® siRNAs for C3orf39
""Sigma-Aldrich siRNA for C3orf39
Sigma-Aldrich shRNA for C3orf39
Explore Sigma-Aldrich super-pooled esiRNAs
Clones:""Browse Clones for the Expression of Recombinant Proteins Available from Millipore
""Browse iPSC Reprogramming Factors at Sigma-Aldrich
"" Origene GFP tagged cDNA clones in CMV expression vector: C3orf39
Origene Myc/DDK tagged cDNA clones in CMV expression vector: C3orf39
Origene untagged cDNA clones in CMV expression vector: C3orf39
""Browse Sino Biological Human cDNA Clones  ""

1 Gene Ontology (GO) molecular function term (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0016757 transferase activity, transferring glycosyl groups IEA--
About this table

"" C3orf39 for ontologies           About GeneDecksing

Animal Models: 1 MGI phenotypic allele "" for C85492 (no phenotypes)


"" C3orf39 for phenotypes           About GeneDecksing

Pathways & Interactions
for C3orf39 gene

(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, Applied Biosystems GeneAssist, KEGG and/or UniProtKB, (map by GeneGo),
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene).
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  User Feedback		"" Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C3orf39

Drugs & Compounds
for C3orf39 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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"" Browse drugs & compounds from Enzo Life Sciences
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"" Browse Tocris compounds for C3orf39

Transcripts
for C3orf39 gene

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 223 Homo sapiens; Apr 2 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from SABiosciences,
Tagged/untagged cDNA clones from OriGene, Primers from OriGene and/or SABiosciences,
Expression Assays from Applied Biosystems)
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Inhib.
RNA:		""Browse for Gene Knock-down Tools from Millipore
""Browse Abnova for Chimera RNAi Products
""Applied Biosystems Silencer® siRNAs:  NM_032806  
"" Origene 29mer shRNA kits in GFP-retroviral vector: C3orf39
Origene shRNA RFP: C3orf39
Origene basic RS shRNA: C3orf39

""Sigma-Aldrich siRNA for C3orf39
Sigma-Aldrich shRNA for C3orf39
Explore Sigma-Aldrich super-pooled esiRNAs

microRNA:""Search SABiosciences for microRNAs that regulate C3orf39: ""
Assays:  ""Applied Biosystems TaqMan® Gene Expression Assays:  
NM_032806  


Clones:"" Origene GFP tagged cDNA clones in CMV expression vector: C3orf39
Origene Myc/DDK tagged cDNA clones in CMV expression vector: C3orf39
Origene untagged cDNA clones in CMV expression vector: C3orf39
Primers:"" Origene genome-wide validated SYBR primer pairs: C3orf39
""SABiosciences RT2 qPCR Primer Assay for C3orf39: PPH07847A ""

REFSEQ mRNAs for C3orf39 gene: 

NM_032806.4  

Additional cDNA sequence: 

AK027472.1 AK092147.1 AK124737.1 BC004508.2 BC021220.2 BC060861.1 CR606513.1 CR608627.1 

6 DOTS entries:

DT.113387  DT.100732718  DT.99949266  DT.100775260  DT.100775261  DT.100775267 

24/119 AceView cDNA sequences (see all 119 ):

CD370932 BM996029 NM_032806 AI948432 CR608627 AI953812 AX747381 AA600028 
BG818918 BQ638883 BQ053356 AI394223 CR606513 BC060861 AA633868 AI347033 
BF351694 BC021220 AK092147 BM711249 BI042461 BC004508 AK124737 BX329477 

"" highest scoring ESTs for C3orf39:

AI953254 BC060861 BG766002 BG770725 BX378090 AA313382 AA357096 AA383450 AA402685 AA402834 

Unigene Cluster for C3orf39:

Chromosome 3 open reading frame 39
Hs.12313  [show with all ESTs]
Unigene Representative Sequence: AK124737


GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for C3orf39

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1:                              
SP2:              -               

About this scheme

ECgene alternative splicing isoforms for C3orf39

2 Ensembl transcripts including schematic representations:
ENST00000344697  ENST00000441964  

Expression
for C3orf39 gene

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 223 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems, Primers from OriGene and/or SABiosciences )
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C3orf39 expression in normal and diseased human tissues

"" Applied Biosystems TaqMan ® Gene Expression Assays for C3orf39

1""  / 2""  / 3""

3 probe-sets matching C3orf39 gene

Affymetrix
probe-set		 Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
53738_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AI953254 0.80 1.00 0.91 1
225689_at2, 3 U133-B 1 1.00 1.00 -- -- BE856822 0.60 1.00 0.82 1
225689_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table

"" C3orf39 for expression           About GeneDecksing

Data from Genenote  (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: TACTGTTTGA

SOURCE GeneReport for Unigene cluster: Hs.12313
Primers:"" Origene genome-wide validated SYBR primer pairs: C3orf39 ""
""SABiosciences RT2 qPCR Primer Assay for C3orf39: PPH07847A ""

Orthologs
for C3orf39 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI May 08 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for C3orf39 gene from 5/8 species (see all 8 )
Organism Gene Locus Description Human
Similarity		 NCBI accessions
dog
(Canis familiaris)		 ago611   -- glycosyltransferase 89.66(n)
94.31(a)		 485621  NM_001010957.1  NP_001010957.1 
chimpanzee
(Pan troglodytes)		 AGO611   -- glycosyltransferase 99.66(n)
99.66(a)		 503649  NM_001012724.1  NP_001012742.1 
cow
(Bos taurus)		 C3orf391   -- glycosyltransferase 90.06(n)
93.62(a)		 497030  NM_001011682.2  NP_001011682.1 
rat
(Rattus norvegicus)		 RGD13048271   -- hypothetical LOC316091 88.39(n)
93.45(a)		 316091  NM_001009437.1  NP_001009437.1 
mouse
(Mus musculus)		 C854921, 5 95
 expressed sequence C854921, 5 88.74(n)1
93.45(a)1		 2154941  NM_153540.31  NP_705768.31 
 AI8520025  AK0344735  (see all 13)
About this table        Species with no ortholog for C3orf39

ENSEMBL Gene Tree for C3orf39

Paralogs
for C3orf39 gene

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
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Genomic Variants
for C3orf39 gene

(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Genotyping Reagents from Applied Biosystems)
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10/95 NCBI SNPs in C3orf39 are shown (see all 95 )
(Click "" for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 74)
ABGenomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 3 posSequenceRecsAA
Chg		TypeMoreRecsAllele
freq		PopTotal
sample		More
------------
""
rs28671,2
C,F,A43120835(+) ATTACT/GCGGTT 1 -- ut31 ese3""16Minor allele frequency- G:0.07MN NA NS EA 1256""
""
rs9394361,2
C,A,H43190443(-) AGGTTC/GTGGCC 1 -- ng51""4Minor allele frequency- G:0.00NA 8""
--
rs19495841,2
C,F,H43192091(-) atttgG/Ctattt 1 -- ng51""6Minor allele frequency- C:0.20NA WA 130""
--
rs9394371,2
C,A,H43147525(-) GGCGGG/ACACCT 1 -- ut51 ese3""3Minor allele frequency- A:0.00NA 6""
""
rs7296541,2
C,F,A43190481(-) CGTACG/ACAAAA 1 -- ng51""3Minor allele frequency- A:0.46NA 76""
--
rs20021821,2
C,A43147538(-) cgggcC/Aggcgc 1 -- ut51""2Minor allele frequency- A:0.00NA 4""
--
rs126378971,2
C,H43191781(+) tgcctA/Gtaatg 1 -- ng51""1Minor allele frequency- G:0.00NA 2""
""
rs18298431,2
C,F43163339(-) GGAGAG/CGGCTG 1 -- ng31""6Minor allele frequency- C:0.04MN NA 506""
--
rs622479871,2
C,F43163449(+) GCGCTT/CTCCCA 1 -- ng31""3Minor allele frequency- C:0.13NA WA 124""
--
rs119184281,2
H43191033(+) AGCCCA/CAATGT 1 -- ng51""0--------
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HapMap Linkage Disequilibrium images for C3orf39 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  ""
      Database of Genomic Variants (DGV) variations for C3orf39: --

Disorders & Mutations
for C3orf39 gene

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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Medical News
for C3orf39 gene

(Possibly Related Articles in Doctor's Guide)
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Publications
for C3orf39 gene

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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  User Feedback		3 PubMed articles for C3orf39 gene:

Search for C3orf39 gene

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing C3orf39 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 84892 HGNC: 25902 AceView: FLJ14566 Ensembl:ENSG00000144647 euGenes: HUgn84892
ECgene: C3orf39 H-InvDB: C3orf39

Other Databases showing C3orf39 gene

(According to HUGE)
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Specialized Databases showing C3orf39 gene

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Intellectual Property
for C3orf39 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
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  User Feedback		Patent Information for C3orf39 gene: ""
Search GeneIP for patents involving C3orf39

GeneCards and IP: ""
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search


Services
for C3orf39 gene

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Novus Biologicals,
Epitomics, Sigma-Aldrich, R&D Systems, SABiosciences, Millipore, Abnova,
Clones available from OriGene, Sigma-Aldrich, Sino Biological, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience)
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Products for C3orf39:
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