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Aliases for C3orf38 Gene

Aliases for C3orf38 Gene

  • Chromosome 3 Open Reading Frame 38 2 3 5

External Ids for C3orf38 Gene

Previous GeneCards Identifiers for C3orf38 Gene

  • GC03P088282
  • GC03P088198

Summaries for C3orf38 Gene

GeneCards Summary for C3orf38 Gene

C3orf38 (Chromosome 3 Open Reading Frame 38) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C3orf38 Gene

  • May be involved in apoptosis regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf38 Gene

Genomics for C3orf38 Gene

Regulatory Elements for C3orf38 Gene

Enhancers for C3orf38 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F088113 0.6 ENCODE 11.9 -36.0 -35978 0.2 CTCF ZNF654 SMC3 TRIM22 RAD21 C3orf38 CGGBP1 ZNF654 GC03P088128 CBX5P1
GH03F088038 0.2 ENCODE 11 -111.0 -110958 0.2 C3orf38 CGGBP1 GC03P088032 GC03P088045
GH03F088030 1.6 FANTOM5 Ensembl ENCODE 2.1 -117.9 -117943 3.6 TBP IRF2 ASH2L ZBTB40 YY1 ZNF316 FOXK2 POLR2A STAT2 MAFK CGGBP1 ZNF654 HTR1F C3orf38 GC03P088032 RNU6ATAC6P
GH03F088159 0.3 FANTOM5 2 +10.2 10236 0.4 ZNF654 C3orf38 CGGBP1 GC03P088161
GH03F087996 1.3 FANTOM5 Ensembl ENCODE 1.9 -152.2 -152243 1.4 PBX2 IRF1 SPI1 CGGBP1 C3orf38 ZNF654 GC03P088032 RNU6ATAC6P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C3orf38 on UCSC Golden Path with GeneCards custom track

Promoters for C3orf38 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for C3orf38 Gene

88,149,743 bp from pter
88,168,729 bp from pter
18,987 bases
Plus strand

Genomic View for C3orf38 Gene

Genes around C3orf38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C3orf38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C3orf38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf38 Gene

Proteins for C3orf38 Gene

  • Protein details for C3orf38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C3orf38
    Protein Accession:
    Secondary Accessions:
    • B2R8X6
    • Q8TC85

    Protein attributes for C3orf38 Gene

    329 amino acids
    Molecular mass:
    37541 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C3orf38 Gene


neXtProt entry for C3orf38 Gene

Post-translational modifications for C3orf38 Gene

  • Ubiquitination at Lys 318
  • Modification sites at PhosphoSitePlus

Other Protein References for C3orf38 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C3orf38 Gene

Domains & Families for C3orf38 Gene

Protein Domains for C3orf38 Gene


Suggested Antigen Peptide Sequences for C3orf38 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C3orf38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C3orf38 Gene

Function for C3orf38 Gene

Molecular function for C3orf38 Gene

UniProtKB/Swiss-Prot Function:
May be involved in apoptosis regulation.
genes like me logo Genes that share phenotypes with C3orf38: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C3orf38 Gene

Localization for C3orf38 Gene

Subcellular locations from

Jensen Localization Image for C3orf38 Gene COMPARTMENTS Subcellular localization image for C3orf38 gene
Compartment Confidence
cytosol 3
nucleus 3
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C3orf38 Gene

Pathways & Interactions for C3orf38 Gene

SuperPathways for C3orf38 Gene

No Data Available

Interacting Proteins for C3orf38 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: Q5JPI3-CC038_HUMAN ENSP00000322469 for C3orf38 Gene via IID STRING

Gene Ontology (GO) - Biological Process for C3orf38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
genes like me logo Genes that share ontologies with C3orf38: view

No data available for Pathways by source and SIGNOR curated interactions for C3orf38 Gene

Transcripts for C3orf38 Gene

Unigene Clusters for C3orf38 Gene

Chromosome 3 open reading frame 38:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf38 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b
SP1: -
SP2: -

Relevant External Links for C3orf38 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C3orf38 Gene

mRNA expression in normal human tissues for C3orf38 Gene

Protein differential expression in normal tissues from HIPED for C3orf38 Gene

This gene is overexpressed in Fetal ovary (41.7) and Peripheral blood mononuclear cells (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C3orf38 Gene

Protein tissue co-expression partners for C3orf38 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C3orf38 Gene:


SOURCE GeneReport for Unigene cluster for C3orf38 Gene:

genes like me logo Genes that share expression patterns with C3orf38: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C3orf38 Gene

Orthologs for C3orf38 Gene

This gene was present in the common ancestor of animals.

Orthologs for C3orf38 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C3orf38 35
  • 100 (a)
C3H3orf38 34
  • 99.59 (n)
(Canis familiaris)
Mammalia C33H3orf38 34
  • 89.57 (n)
C3orf38 35
  • 84 (a)
(Bos Taurus)
Mammalia C1H3orf38 34
  • 88.96 (n)
C3orf38 35
  • 85 (a)
(Mus musculus)
Mammalia 4930453N24Rik 34 16 35
  • 85.99 (n)
(Ornithorhynchus anatinus)
Mammalia C3orf38 35
  • 62 (a)
(Monodelphis domestica)
Mammalia C3orf38 35
  • 54 (a)
(Gallus gallus)
Aves C1H3ORF38 34
  • 66.78 (n)
C3orf38 35
  • 54 (a)
(Anolis carolinensis)
Reptilia C3orf38 35
  • 56 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c3orf38 34
  • 56.89 (n)
(Danio rerio)
Actinopterygii LOC100330300 34
  • 56.96 (n)
C9H3orf38 35
  • 49 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG13876 34 35
  • 43.11 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 32 (a)
Species where no ortholog for C3orf38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C3orf38 Gene

Gene Tree for C3orf38 (if available)
Gene Tree for C3orf38 (if available)

Paralogs for C3orf38 Gene Pseudogenes for C3orf38 Gene

genes like me logo Genes that share paralogs with C3orf38: view

No data available for Paralogs for C3orf38 Gene

Variants for C3orf38 Gene

Sequence variations from dbSNP and Humsavar for C3orf38 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111245307 -- 88,150,527(+) GGGCT(G/T)TTTTC intron-variant, upstream-variant-2KB
rs111576255 -- 88,157,539(+) CCCAT(G/T)CATGT utr-variant-3-prime
rs111614804 -- 88,148,870(+) TCCTG(G/T)CCTCT intron-variant, upstream-variant-2KB
rs111741684 -- 88,149,082(+) AATGC(A/G)TTTAG intron-variant, upstream-variant-2KB
rs112305218 -- 88,152,084(+) TATGA(C/G)TCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C3orf38 Gene

Variant ID Type Subtype PubMed ID
esv3596913 CNV gain 21293372
esv3596915 CNV gain 21293372

Variation tolerance for C3orf38 Gene

Residual Variation Intolerance Score: 66.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.59; 30.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C3orf38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C3orf38 Gene

Disorders for C3orf38 Gene

Relevant External Links for C3orf38

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C3orf38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C3orf38 Gene

Publications for C3orf38 Gene

  1. Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study. (PMID: 21177773) Moyer A.M. … Weinshilboum R.M. (Toxicol. Sci. 2011) 3 46 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X. … Vidal M. (Cell 2016) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for C3orf38 Gene

Sources for C3orf38 Gene

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