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Aliases for C3orf38 Gene

Aliases for C3orf38 Gene

  • Chromosome 3 Open Reading Frame 38 2 3

External Ids for C3orf38 Gene

Previous GeneCards Identifiers for C3orf38 Gene

  • GC03P088282
  • GC03P088198

Summaries for C3orf38 Gene

GeneCards Summary for C3orf38 Gene

C3orf38 (Chromosome 3 Open Reading Frame 38) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C3orf38 Gene

  • May be involved in apoptosis regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf38 Gene

Genomics for C3orf38 Gene

Regulatory Elements for C3orf38 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C3orf38 Gene

Start:
88,149,724 bp from pter
End:
88,168,729 bp from pter
Size:
19,006 bases
Orientation:
Plus strand

Genomic View for C3orf38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C3orf38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf38 Gene

Proteins for C3orf38 Gene

  • Protein details for C3orf38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JPI3-CC038_HUMAN
    Recommended name:
    Uncharacterized protein C3orf38
    Protein Accession:
    Q5JPI3
    Secondary Accessions:
    • B2R8X6
    • Q8TC85

    Protein attributes for C3orf38 Gene

    Size:
    329 amino acids
    Molecular mass:
    37541 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C3orf38 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C3orf38 Gene

Proteomics data for C3orf38 Gene at MOPED

Post-translational modifications for C3orf38 Gene

  • Ubiquitination at Lys318
  • Modification sites at PhosphoSitePlus

Other Protein References for C3orf38 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for C3orf38 Gene

Domains for C3orf38 Gene

Protein Domains for C3orf38 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C3orf38 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C3orf38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C3orf38 Gene

Function for C3orf38 Gene

Molecular function for C3orf38 Gene

UniProtKB/Swiss-Prot Function:
May be involved in apoptosis regulation.

Phenotypes for C3orf38 Gene

GenomeRNAi human phenotypes for C3orf38:
genes like me logo Genes that share phenotypes with C3orf38: view

Animal Model Products

CRISPR Products

miRNA for C3orf38 Gene

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf38

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C3orf38 Gene

Localization for C3orf38 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C3orf38 Gene COMPARTMENTS Subcellular localization image for C3orf38 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C3orf38 Gene

Pathways for C3orf38 Gene

SuperPathways for C3orf38 Gene

No Data Available

Interacting Proteins for C3orf38 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000322469%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000258403%0d%0a
Selected Interacting proteins: ENSP00000322469 for C3orf38 Gene via STRING

Gene Ontology (GO) - Biological Process for C3orf38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
genes like me logo Genes that share ontologies with C3orf38: view

No data available for Pathways by source for C3orf38 Gene

Transcripts for C3orf38 Gene

mRNA/cDNA for C3orf38 Gene

Unigene Clusters for C3orf38 Gene

Chromosome 3 open reading frame 38:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf38

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf38 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b
SP1: -
SP2: -
SP3:

Relevant External Links for C3orf38 Gene

GeneLoc Exon Structure for
C3orf38
ECgene alternative splicing isoforms for
C3orf38

Expression for C3orf38 Gene

mRNA expression in normal human tissues for C3orf38 Gene

Protein differential expression in normal tissues for C3orf38 Gene

This gene is overexpressed in Fetal ovary (41.7) and Peripheral blood mononuclear cells (6.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C3orf38 Gene

SOURCE GeneReport for Unigene cluster for C3orf38 Gene Hs.518099

genes like me logo Genes that share expressions with C3orf38: view

Expression partners for C3orf38 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C3orf38 Gene

Orthologs for C3orf38 Gene

This gene was present in the common ancestor of animals.

Orthologs for C3orf38 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C1H3orf38 35
  • 88.96 (n)
  • 86.17 (a)
C3orf38 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C33H3orf38 35
  • 89.57 (n)
  • 87.42 (a)
C3orf38 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930453N24Rik 35
  • 85.99 (n)
  • 84.66 (a)
4930453N24Rik 16
4930453N24Rik 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C3H3orf38 35
  • 99.59 (n)
  • 99.7 (a)
C3orf38 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C3orf38 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C3orf38 36
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1H3ORF38 35
  • 66.78 (n)
  • 57.63 (a)
C3orf38 36
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C3orf38 36
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c3orf38 35
  • 56.89 (n)
  • 49.67 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100330300 35
  • 56.96 (n)
  • 52.63 (a)
C9H3orf38 36
  • 49 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG13876 35
  • 43.11 (n)
  • 28.51 (a)
CG13876 36
  • 25 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 32 (a)
OneToOne
Species with no ortholog for C3orf38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C3orf38 Gene

ENSEMBL:
Gene Tree for C3orf38 (if available)
TreeFam:
Gene Tree for C3orf38 (if available)

Paralogs for C3orf38 Gene

Pseudogenes.org Pseudogenes for C3orf38 Gene

genes like me logo Genes that share paralogs with C3orf38: view

No data available for Paralogs for C3orf38 Gene

Variants for C3orf38 Gene

Sequence variations from dbSNP and Humsavar for C3orf38 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs5850832 -- 88,152,755(+) AAAAA(-/A)GAAAT intron-variant
rs6551279 -- 88,152,154(+) ctcac(A/G)cctgt intron-variant
rs6551280 -- 88,152,589(+) aaccc(C/T)gtctg intron-variant
rs6781333 -- 88,157,381(+) TTCAG(A/C)CAACA utr-variant-3-prime
rs7427416 -- 88,156,698(+) AAGCG(C/T)TAAGT utr-variant-3-prime

Relevant External Links for C3orf38 Gene

HapMap Linkage Disequilibrium report
C3orf38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C3orf38 Gene

Disorders for C3orf38 Gene

Relevant External Links for C3orf38

Genetic Association Database (GAD)
C3orf38

No disorders were found for C3orf38 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C3orf38 Gene

Publications for C3orf38 Gene

  1. Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study. (PMID: 21177773) Moyer A.M. … Weinshilboum R.M. (Toxicol. Sci. 2011) 3 48
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for C3orf38 Gene

Sources for C3orf38 Gene

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