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C3orf33 Gene

protein-coding   GIFtS: 45
GCID: GC03M155480

Chromosome 3 Open Reading Frame 33

  Search for C3orf33
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Chromosome 3 Open Reading Frame 331 2
AC3-332
AP-1 Activity Suppressor2
Uncharacterized Protein C3orf332

External Ids:    HGNC: 264341   Entrez Gene: 2853152   Ensembl: ENSG000001749287   UniProtKB: Q6P1S23   

Export aliases for C3orf33 gene to outside databases

Previous GC identifers: GC03M156964 GC03M152875


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C3orf33 Gene:
C3orf33 (chromosome 3 open reading frame 33) is a protein-coding gene. GO annotations related to this gene include hydrolase activity, acting on ester bonds and nucleic acid binding.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NT_005612.17  NC_018914.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C3orf33 gene promoter:
         SRF   NF-1/L   NF-1   SRF (504 AA)   HNF-1   HNF-1A   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for C3orf33

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C3orf33


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q25.31   Ensembl cytogenetic band:  3q25.31   HGNC cytogenetic band: 3q25.31

C3orf33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C3orf33 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M155480:  view genomic region     (about GC identifiers)

Start:
155,480,401 bp from pter      End:
155,524,140 bp from pter
Size:
43,740 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CC033_HUMAN, Q6P1S2 (See protein sequence)
Recommended Name: Uncharacterized protein C3orf33  
Size: 294 amino acids; 33765 Da
Sequence caution: Sequence=AAO06952.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: A8K1H5 Q86YE6 Q8IXA7 Q96NB5
Alternative splicing: 2 isoforms:  Q6P1S2-1   Q6P1S2-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for C3orf33: NX_Q6P1S2

Explore proteomics data for C3orf33 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See C3orf33 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_775928.1  
    ENSEMBL proteins: 
     ENSP00000418410   ENSP00000342512   ENSP00000420246   ENSP00000417361   ENSP00000445446  

    C3orf33 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for C3orf33

     
    Search eBioscience for Proteins for C3orf33 

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    LSBio Antibodies in human, mouse, rat for C3orf33

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    Cloud-Clone Corp. CLIAs for C3orf33
    Search eBioscience for ELISAs for C3orf33 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR016071 Staphylococal_nuclease_OB-fold

    Graphical View of Domain Structure for InterPro Entry Q6P1S2

    ProtoNet protein and cluster: Q6P1S2


    Find genes that share domains with C3orf33           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0016788hydrolase activity, acting on ester bonds IEA--
         
    Find genes that share ontologies with C3orf33           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for C3orf33:
     Increased cell number in G2M,   Synthetic lethal with Ras 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for C3orf33
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for C3orf33
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    miRNA
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    4 qRT-PCR Assays for microRNAs that regulate C3orf33:
    hsa-miR-548a-3p hsa-miR-3613-3p hsa-miR-548e hsa-miR-340
    SwitchGear 3'UTR luciferase reporter plasmidC3orf33 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat C3orf33

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf33


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CC033_HUMAN, Q6P1S2: Membrane; Single-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IDA--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with C3orf33           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C3orf33
    Interactions:

        Search GeneGlobe Interaction Network for C3orf33

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for C3orf33 (ENSP000003425124) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0051090regulation of sequence-specific DNA binding transcription factor activity IDA--
    GO:0070373negative regulation of ERK1 and ERK2 cascade IDA--

    Find genes that share ontologies with C3orf33           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C3orf33 (CC033)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for C3orf33 gene: 
    NM_173657.1  

    Unigene Cluster for C3orf33:

    Chromosome 3 open reading frame 33
    Hs.350846  [show with all ESTs]
    Unigene Representative Sequence: NM_173657
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000482061 ENST00000340171 ENST00000465810 ENST00000486435 ENST00000534941(uc003fal.1 uc003fam.1)

    miRNA
    Products:
         
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    4 qRT-PCR Assays for microRNAs that regulate C3orf33:
    hsa-miR-548a-3p hsa-miR-3613-3p hsa-miR-548e hsa-miR-340
    SwitchGear 3'UTR luciferase reporter plasmidC3orf33 3' UTR sequence
    Inhib. RNA
    Products:
         
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    Predesigned siRNA for gene silencing in human, mouse, rat C3orf33
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    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: C3orf33 (NM_173657)
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    Primer
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    OriGene qPCR primer pairs and template standards for C3orf33
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat C3orf33
      QuantiTect SYBR Green Assays in human, mouse, rat C3orf33
      QuantiFast Probe-based Assays in human, mouse, rat C3orf33

    Additional mRNA sequence: 

    AF115515.1 AK055701.1 AK289890.1 AL832165.1 BC042198.1 BC064898.1 

    4 DOTS entries:

    DT.432430  DT.100744765  DT.97828343  DT.91676295 

    19 AceView cDNA sequences:

    BQ435341 AK055701 AA405576 BC064898 NM_173657 AI961264 BU153473 CB962222 
    BC042198 AI929652 AL832165 AF115515 BI257957 AA405529 CD250833 BF792667 
    BI870387 H55939 BQ441290 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    C3orf33 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GAGTTTCGCT
    C3orf33 Expression
    About this image

    C3orf33 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C3orf33 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.350846
        Custom PCR Arrays for C3orf33
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf33

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for C3orf33 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia E130311K13Rik1 , 5 RIKEN cDNA E130311K13 gene1, 5 80.88(n)1
    74.9(a)1
      3 (30.08 cM)5
    3296591  NM_177856.41  NP_808524.11 
     639146845 
    chicken
    (Gallus gallus)
    Aves C9H3orf331 chromosome 9 open reading frame, human C3orf33 59.61(n)
    54.5(a)
      100859600  XM_003641798.2  XP_003641846.1 
    lizard
    (Anolis carolinensis)
    Reptilia C3orf336
    chromosome 3 open reading frame 33
    54(a)
    1 ↔ 1
    3(15863207-15870385)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia LOC1004969311 chromosome unknown open reading frame, human C3orf33 63.05(n)
    55.43(a)
      100496931  XM_004914844.1  XP_004914901.1 
    zebrafish
    (Danio rerio)
    Actinopterygii c3orf331 c3orf33 homolog (H. sapiens) 50.79(n)
    43.92(a)
      565816  NM_001144796.1  NP_001138268.1 
    worm
    (Caenorhabditis elegans)
    Secernentea W09H1.36
    F32A11.16
    Protein F32A11.1 (F32A11.1) mRNA, complete cds
    30(a)
    21(a)
    many → 1
    many → 1
    II(13184429-13185023) WBGene00012373
    II(13157335-13160428) WBGene00009307


    ENSEMBL Gene Tree for C3orf33 (if available)
    TreeFam Gene Tree for C3orf33 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for C3orf33 gene
    Selected SIMAP similar genes for C3orf33 using alignment to 4 protein entries:     CC033_HUMAN (see all proteins) (see all similar genes):
    SNRPF    TNNT1    RHBG    COQ5    ARL6IP5    LSM12
    GBGT1    MST132    PFKFB3    TM2D1    RBP7    SEC14L3
    FLJ00047    GALK2    ATL2    NDC80    IRF2    TUBA1C

    Find genes that share paralogs with C3orf33           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for C3orf33 (see all 970)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1387308011,2
    C--152873564(+) ATTGGC/GTACTT 1 -- ds50010--------
    rs1488476041,2
    --155479913(+) TTTCTA/GTCCTC 1 -- ds50010--------
    rs1437884681,2
    C--155479978(+) CAGAGA/GCTCAC 1 -- ds50010--------
    rs1131116891,2
    C--155479982(+) GCTCACT/-CTGTC 1 -- ds50011Minor allele frequency- -:0.50CSA 2
    rs1481366151,2
    --155480000(+) CAGGAA/GTGCAG 1 -- ds50010--------
    rs1419279651,2
    --155480086(+) TGGGAA/TTACAG 1 -- ds50010--------
    rs1813037871,2
    --155480091(+) TTACAC/GGTGTG 1 -- ds50010--------
    rs1139741151,2
    C,F--155480098(+) TGTGAC/GCCACC 1 -- ds50012Minor allele frequency- G:0.04CSA WA 120
    rs1148771051,2
    C,F--155480160(+) CCAGGC/ATGGTC 1 -- ds50012Minor allele frequency- A:0.08WA NA 238
    rs1859424101,2
    --155480166(+) TGGTCA/GTTGGT 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for C3orf33 (155480401 - 155524140 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 9 variations for C3orf33:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv819264CNV Loss19587683
    nsv516712CNV Gain19592680
    esv25006CNV Gain19812545
    nsv877680CNV Gain21882294
    nsv818180CNV Gain17921354
    esv33346CNV Gain17666407
    nsv441844CNV CNV18776908
    nsv514997CNV Complex21397061
    dgv1524e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with C3orf33           About GenesLikeMe

    Genetic Association Database (GAD): C3orf33

    Export disorders for C3orf33 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C3orf33 gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with C3orf33)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. AC3-33, a novel secretory protein, inhibits Elk1 transcriptional activity via ERK pathway. (PubMed id 20680465)1, 3 Hao D....Zhang X. (Mol. Biol. Rep. 2011)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Prokaryotic expression and characterization of human AC3-33 protein. (PubMed id 20515784)1, 9 Zhang X....Yang W. (Front Biosci (Elite Ed) 2010)
    5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
    6. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    7. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
    8. [Molecular cloning and preliminary function study of a novel human gene AC3-33 related to suppress AP-1 activity]. (PubMed id 18487146)1 Liu P....Zhang X.J. (Yi Chuan 2008)
    9. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (BMC Med. Genet. 2007)
    10. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (Nature 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 285315 HGNC: 26434 AceView: FLJ31139 Ensembl:ENSG00000174928 euGenes: HUgn285315
    ECgene: C3orf33 H-InvDB: C3orf33

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C3orf33 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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