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Aliases for C3orf30 Gene

Aliases for C3orf30 Gene

  • Chromosome 3 Open Reading Frame 30 2 3
  • Uncharacterized Protein C3orf30 3
  • TSCPA 3

External Ids for C3orf30 Gene

Previous GeneCards Identifiers for C3orf30 Gene

  • GC03P120348
  • GC03P118864
  • GC03P116240

Summaries for C3orf30 Gene

GeneCards Summary for C3orf30 Gene

C3orf30 (Chromosome 3 Open Reading Frame 30) is a Protein Coding gene. GO annotations related to this gene include cAMP-dependent protein kinase regulator activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf30 Gene

Genomics for C3orf30 Gene

Regulatory Elements for C3orf30 Gene

Genomic Location for C3orf30 Gene

Start:
119,146,150 bp from pter
End:
119,160,042 bp from pter
Size:
13,893 bases
Orientation:
Plus strand

Genomic View for C3orf30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C3orf30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf30 Gene

Proteins for C3orf30 Gene

  • Protein details for C3orf30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M34-CC030_HUMAN
    Recommended name:
    Uncharacterized protein C3orf30
    Protein Accession:
    Q96M34
    Secondary Accessions:
    • A1L4B7

    Protein attributes for C3orf30 Gene

    Size:
    536 amino acids
    Molecular mass:
    60162 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C3orf30 Gene

Proteomics data for C3orf30 Gene at MOPED

Post-translational modifications for C3orf30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C3orf30 Gene

No data available for DME Specific Peptides for C3orf30 Gene

Domains for C3orf30 Gene

Protein Domains for C3orf30 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C3orf30 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C3orf30: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C3orf30 Gene

Function for C3orf30 Gene

Phenotypes for C3orf30 Gene

GenomeRNAi human phenotypes for C3orf30:
genes like me logo Genes that share phenotypes with C3orf30: view

Animal Model Products

CRISPR Products

miRNA for C3orf30 Gene

miRTarBase miRNAs that target C3orf30

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf30

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C3orf30 Gene

Localization for C3orf30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C3orf30 Gene COMPARTMENTS Subcellular localization image for C3orf30 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C3orf30 Gene

Pathways for C3orf30 Gene

SuperPathways for C3orf30 Gene

No Data Available

Interacting Proteins for C3orf30 Gene

Gene Ontology (GO) - Biological Process for C3orf30 Gene

None

No data available for Pathways by source for C3orf30 Gene

Transcripts for C3orf30 Gene

mRNA/cDNA for C3orf30 Gene

Unigene Clusters for C3orf30 Gene

Chromosome 3 open reading frame 30:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C3orf30

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C3orf30
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf30 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b
SP1:
SP2: - -
SP3: -

Relevant External Links for C3orf30 Gene

GeneLoc Exon Structure for
C3orf30
ECgene alternative splicing isoforms for
C3orf30

Expression for C3orf30 Gene

mRNA expression in normal human tissues for C3orf30 Gene

mRNA differential expression in normal tissues according to GTEx for C3orf30 Gene

This gene is overexpressed in Testis (52.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C3orf30 Gene

SOURCE GeneReport for Unigene cluster for C3orf30 Gene Hs.730099

genes like me logo Genes that share expressions with C3orf30: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C3orf30 Gene

Orthologs for C3orf30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C3orf30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3H3orf30 35
  • 99.13 (n)
  • 98.32 (a)
cow
(Bos Taurus)
Mammalia C1H3orf30 35
  • 63.92 (n)
  • 44.9 (a)
C3orf30 36
  • 47 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C33H3orf30 35
  • 67.04 (n)
  • 49.22 (a)
C3orf30 36
  • 41 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930435E12Rik 35
  • 62.35 (n)
  • 44.98 (a)
4930435E12Rik 16
4930435E12Rik 36
  • 38 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1306995 35
  • 61.26 (n)
  • 45.45 (a)
chicken
(Gallus gallus)
Aves C3orf30 36
  • 24 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C3orf30 36
  • 80 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C5H3orf30 36
  • 37 (a)
OneToOne
Species with no ortholog for C3orf30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C3orf30 Gene

ENSEMBL:
Gene Tree for C3orf30 (if available)
TreeFam:
Gene Tree for C3orf30 (if available)

Paralogs for C3orf30 Gene

No data available for Paralogs for C3orf30 Gene

Variants for C3orf30 Gene

Sequence variations from dbSNP and Humsavar for C3orf30 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs4133080 -- 119,151,509(-) TAAAG(A/C)ATCCT downstream-variant-500B
rs4687974 -- 119,148,958(+) agctt(G/T)caggc intron-variant
rs6777192 -- 119,150,839(+) ATTTA(C/T)ACTAA intron-variant
rs6792069 -- 119,151,744(+) gtcca(A/G)tcttt downstream-variant-500B
rs9289122 - 119,148,200(+) ATTGA(C/G)CAAGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C3orf30 Gene

Variant ID Type Subtype PubMed ID
nsv829692 CNV Loss 17160897
esv25249 CNV Loss 19812545

Relevant External Links for C3orf30 Gene

HapMap Linkage Disequilibrium report
C3orf30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C3orf30 Gene

Disorders for C3orf30 Gene

No disorders were found for C3orf30 Gene.

No data available for UniProtKB/Swiss-Prot for C3orf30 Gene

Publications for C3orf30 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Expression profile of a novel germ cell-specific gene, TSCPA, in mice and human. (PMID: 19821082) Yu Z. … Cai Z. (J. Huazhong Univ. Sci. Technol. Med. Sci. 2009) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C3orf30 Gene

Sources for C3orf30 Gene

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