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Aliases for C3orf22 Gene

Aliases for C3orf22 Gene

  • Chromosome 3 Open Reading Frame 22 2 3

External Ids for C3orf22 Gene

Previous GeneCards Identifiers for C3orf22 Gene

  • GC03M127752
  • GC03M126267
  • GC03M123648

Summaries for C3orf22 Gene

GeneCards Summary for C3orf22 Gene

C3orf22 (Chromosome 3 Open Reading Frame 22) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C3orf22 Gene

Genomics for C3orf22 Gene

Regulatory Elements for C3orf22 Gene

Transcription factor binding sites by QIAGEN in the C3orf22 gene promoter:

Genomic Location for C3orf22 Gene

Start:
126,526,999 bp from pter
End:
126,558,965 bp from pter
Size:
31,967 bases
Orientation:
Minus strand

Genomic View for C3orf22 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C3orf22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C3orf22 Gene

Proteins for C3orf22 Gene

  • Protein details for C3orf22 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N5N4-CC022_HUMAN
    Recommended name:
    Uncharacterized protein C3orf22
    Protein Accession:
    Q8N5N4
    Secondary Accessions:
    • B3KUS9

    Protein attributes for C3orf22 Gene

    Size:
    141 amino acids
    Molecular mass:
    15686 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C3orf22 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C3orf22 Gene

Proteomics data for C3orf22 Gene at MOPED

Post-translational modifications for C3orf22 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C3orf22 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C3orf22 Gene

Domains for C3orf22 Gene

Protein Domains for C3orf22 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C3orf22 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C3orf22: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C3orf22 Gene

Function for C3orf22 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C3orf22 Gene

Localization for C3orf22 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C3orf22 Gene COMPARTMENTS Subcellular localization image for C3orf22 gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C3orf22 Gene

Pathways for C3orf22 Gene

SuperPathways for C3orf22 Gene

No Data Available

Interacting Proteins for C3orf22 Gene

Gene Ontology (GO) - Biological Process for C3orf22 Gene

None

No data available for Pathways by source for C3orf22 Gene

Transcripts for C3orf22 Gene

mRNA/cDNA for C3orf22 Gene

(16) Selected AceView cDNA sequences:
(8) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C3orf22 Gene

Chromosome 3 open reading frame 22:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C3orf22 Gene

No ASD Table

Relevant External Links for C3orf22 Gene

GeneLoc Exon Structure for
C3orf22
ECgene alternative splicing isoforms for
C3orf22

Expression for C3orf22 Gene

mRNA expression in normal human tissues for C3orf22 Gene

mRNA differential expression in normal tissues according to GTEx for C3orf22 Gene

This gene is overexpressed in Testis (50.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C3orf22 Gene

SOURCE GeneReport for Unigene cluster for C3orf22 Gene Hs.178210

genes like me logo Genes that share expressions with C3orf22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C3orf22 Gene

Orthologs for C3orf22 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C3orf22 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf22 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C3H3orf22 35
  • 72.78 (n)
  • 64.22 (a)
C3H3orf22 36
  • 51 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20H3orf22 35
  • 77.06 (n)
  • 65.59 (a)
C3orf22 36
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC048671 16
BC048671 36
  • 46 (a)
OneToOne
Species with no ortholog for C3orf22:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C3orf22 Gene

ENSEMBL:
Gene Tree for C3orf22 (if available)
TreeFam:
Gene Tree for C3orf22 (if available)

Paralogs for C3orf22 Gene

No data available for Paralogs for C3orf22 Gene

Variants for C3orf22 Gene

Sequence variations from dbSNP and Humsavar for C3orf22 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs869463 -- 126,550,075(+) GCCCC(A/G)AGCCT reference, synonymous-codon, intron-variant
rs869464 -- 126,550,110(+) TGGCC(G/T)TCAGG intron-variant
rs1123373 -- 126,546,863(-) tgagt(A/G)gtttt intron-variant
rs1490747 -- 126,553,052(-) TGCTT(C/G)CCCAA intron-variant
rs1490748 -- 126,550,987(-) GAAGC(A/G)ATGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C3orf22 Gene

Variant ID Type Subtype PubMed ID
nsv877432 CNV Loss 21882294
nsv829717 CNV Loss 17160897
dgv5246n71 CNV Loss 21882294
esv2658491 CNV Deletion 23128226
esv2725872 CNV Deletion 23290073

Relevant External Links for C3orf22 Gene

HapMap Linkage Disequilibrium report
C3orf22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C3orf22 Gene

Disorders for C3orf22 Gene

No disorders were found for C3orf22 Gene.

No data available for UniProtKB/Swiss-Prot for C3orf22 Gene

Publications for C3orf22 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for C3orf22 Gene

Sources for C3orf22 Gene

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