C3orf17 Gene
protein-coding GIFtS : 44
GCID: GC03 M112721
chromosome 3 open reading frame 17
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Aliasesfor C3orf17 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases Chromosome 3 Open Reading Frame 17 1 2 NET171 2 DKFZP434F20211 Uncharacterized Protein C3orf172
External Ids: HGNC: 24496 1 Entrez Gene: 25871 2 Ensembl: ENSG00000163608 7 UniProtKB: Q6NW34 3 ORGUL members: NONCODE:n408031
Export aliases for C3orf17 gene to outside databases Previous GC identifers: GC03M114207 GC03M110104
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Summariesfor C3orf17 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor C3orf17 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_005612.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the C3orf17 gene promoter: E2F-4 E2F-3a E2F-5 AML1a E2F-2 POU3F2 E2F E2F-1 POU2F1 POU2F1a Other transcription factors Search SABiosciences Chromatin IP Primers for C3orf17 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C3orf17
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3q13.2 Ensembl cytogenetic band: 3q13.2 HGNC cytogenetic band: 3q13.2 C3orf17 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M112721: view genomic region
(about GC identifiers )
Start:
112,721,287 bp from pter
End:
112,738,708 bp from pter
Size:
17,422 bases
Orientation:
minus strand
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Proteinsfor C3orf17 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CC017_HUMAN, Q6NW34 (See
protein sequence )Recommended Name: Uncharacterized protein C3orf17 Size : 567 amino acids; 64552 Da
Subcellular location : Membrane; Single-pass membrane protein (Potential)
Sequence caution : Sequence=CAB55998.1; Type=Erroneous initiation;
Secondary accessions : D3DN69 Q68DM6 Q9H7U0 Q9UFM4Alternative splicing : 2 isoforms : Q6NW34-1 Q6NW34-2 Explore the universe of human proteins at neXtProt for C3orf17: NX_Q6NW34 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6NW34 C3orf17 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_056227.2 ENSEMBL proteins: ENSP00000320251 ENSP00000373173 ENSP00000419716 ENSP00000420577 ENSP00000418677 ENSP00000417983 ENSP00000417968 ENSP00000420471 ENSP00000417734 ENSP00000418309 ENSP00000420036 ENSP00000419462 ENSP00000419174 ENSP00000418902 ENSP00000420505 ENSP00000418133 ENSP00000417613 ENSP00000377438 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
C3orf17 for ontologies About GeneDecksing C3orf17 Antibody Products: Assay Products for C3orf17:
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Protein
Domains / Familiesfor C3orf17 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section ProtoNet protein and cluster: Q6NW34
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Functionfor C3orf17 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: C3orf17 (NM_015412 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C3orf17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C3orf17
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf17
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Pathways & Interactionsfor C3orf17 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C3orf17 STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)5 Interacting proteins for C3orf17 (Q6NW34 3 ENSP00000320251 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor C3orf17 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for C3orf17 Search CenterWatch for drugs/clinical trials and news about C3orf17 / CC017
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Transcriptsfor C3orf17 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for C3orf17 gene (3 alternative transcripts): NM_001025072.2 NM_001025073.2 NM_015412.3 Unigene Cluster for C3orf17:
Chromosome 3 open reading frame 17 Hs.591288 [show with all ESTs ] Unigene Representative Sequence: NM_015412 18/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25 ): ENST00000314400 (uc003dzr.3 uc003dzt.3 uc003dzs.3 uc010hqg.3 uc011bia.2 uc011bib.2 )ENST00000383675 (uc011bhz.2 uc003dzu.3 uc011bic.2 uc011bid.2 )ENST00000486271 ENST00000472637 ENST00000469809 ENST00000474311 ENST00000472705 ENST00000473284 ENST00000469169 ENST00000489848 ENST00000462295 ENST00000461381 ENST00000482229 ENST00000472762 ENST00000464816 ENST00000496206 ENST00000460410 ENST00000494164 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: C3orf17 (NM_015412 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C3orf17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C3orf17
Additional cDNA sequence: AF147328.1 AK024325.1 AK092546.1 AK130779.1 AK293218.1 AK295165.1 AK295954.1 AK300811.1 AK301161.1 AK304022.1 AK304083.1 AL117573.1 BC014673.2 BC056663.1 BC067743.1 CR749341.1 NR_027794.1 NR_027796.1
16 DOTS entries : DT.100806688 DT.452742
DT.101975392 DT.95088791 DT.95088785 DT.120897159 DT.99991498 DT.100806692 DT.100806689 DT.100806693 DT.100806694 DT.120897168 DT.120897156 DT.91858236 DT.95232783 DT.120897202 24/218 AceView cDNA sequences (see all 218 ):
BX510169 AI589104 AA436214 AA224322 R10706 CD517613 CB135516 CB143200 BQ002792 AA243177 CA393371 BC056663 AA305278 CB152916 CR613168 BM755001 AK024325 AI203442 AI219465 AW190649 AI025596 BQ002507 AW769414 AA243239 GeneLoc Exon Structure 5/17 Alternative Splicing Database (ASD) splice patterns (SP) for C3orf17 (see all 17 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d · 6e ^ 7a · 7b ^ 8 ^ 9a · SP1 :                               -   -                   -   SP2 :                               -   -                   -   SP3 :               -   -               -   -                   -   SP4 :                               -   -   -   -   -   -   -           SP5 :                         -   -   -   -   -   -                  
ExUns: 9b · 9c ^ 10a · 10b · 10c SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
ECgene alternative splicing isoforms for C3orf17
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Expression for C3orf17 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section C3orf17 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCAGGTGTTA
About this image C3orf17 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See C3orf17 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for C3orf17 SOURCE GeneReport for Unigene cluster: Hs.591288 SABiosciences Custom PCR Arrays for C3orf17 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C3orf17Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat C3orf17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C3orf17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C3orf17 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf17
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Orthologsfor C3orf17 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for C3orf17 gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for C3orf17 (if available)TreeFam Gene Tree for C3orf17 (if available)
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Paralogsfor C3orf17 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor C3orf17 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for C3orf17 (112721287 - 112738708 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for C3orf17 1 CNV : 91474
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C3orf17
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Disorders
/ Diseasesfor C3orf17 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
C3orf17 for disorders About GeneDecksing 2 diseases for C3orf17 : About MalaCards fanconi's anemia anemia Export disorders for C3orf17 gene to outside databases
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Publicationsfor C3orf17 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for C3orf17 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with C3orf17) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231) 2 Olsen J.V....Mann M. (2010) TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. (PubMed id 19850743) 1 Vanderwerf S.M....Bagby G.C. (2009) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 2 Daub H.... Mann M. (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008)
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External Searches for C3orf17 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing C3orf17 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing C3orf17 gene
(According to HUGE )
About This Section --
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Specialized Databases showing C3orf17 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for C3orf17 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for C3orf17 gene: Search GeneIP for patents involving C3orf17 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor C3orf17 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for C3orf17 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for C3orf17 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C3orf17 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for C3orf17 OriGene 3'-UTR Clone for C3orf17 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C3orf17 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for C3orf17 OriGene Custom Protein Services for C3orf17 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C3orf17 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C3orf17 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C3orf17 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat C3orf17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C3orf17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C3orf17
Search Tocris compounds for C3orf17
C3orf17 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C3orf17
Search ThermoFisher Antibodies for C3orf17
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C3orf17
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Aliases for C3orf17
Databases for C3orf17
Disorders / Diseases for C3orf17
Domains / Families for C3orf17
Drugs / Compounds for C3orf17
Expression for C3orf17
Function for C3orf17
Genomic Views for C3orf17
Intellectual Property for C3orf17
Orthologs for C3orf17
Paralogs for C3orf17
Pathways / Interactions for C3orf17
Products for C3orf17
Proteins for C3orf17
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Search Box for C3orf17
Summaries for C3orf17
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Variants for C3orf17
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