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Aliases for C2orf83 Gene

Aliases for C2orf83 Gene

  • Chromosome 2 Open Reading Frame 83 2 3

External Ids for C2orf83 Gene

Previous GeneCards Identifiers for C2orf83 Gene

  • GC02M228184
  • GC02M228474
  • GC02M220318

Summaries for C2orf83 Gene

GeneCards Summary for C2orf83 Gene

C2orf83 (Chromosome 2 Open Reading Frame 83) is a Protein Coding gene. GO annotations related to this gene include folic acid binding and reduced folate carrier activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2orf83 Gene

Genomics for C2orf83 Gene

Regulatory Elements for C2orf83 Gene

Genomic Location for C2orf83 Gene

Start:
227,610,090 bp from pter
End:
227,633,320 bp from pter
Size:
23,231 bases
Orientation:
Minus strand

Genomic View for C2orf83 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C2orf83 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2orf83 Gene

Proteins for C2orf83 Gene

  • Protein details for C2orf83 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53S99-CB083_HUMAN
    Recommended name:
    Folate transporter-like protein C2orf83
    Protein Accession:
    Q53S99
    Secondary Accessions:
    • A2RRG6
    • B8ZZI8
    • Q9NPW4

    Protein attributes for C2orf83 Gene

    Size:
    150 amino acids
    Molecular mass:
    16373 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB95774.1; Type=Erroneous termination; Positions=141; Note=Translated as Trp.; Evidence={ECO:0000305}; Sequence=CAH18470.1; Type=Erroneous termination; Positions=141; Note=Translated as Trp.; Evidence={ECO:0000305};

    Alternative splice isoforms for C2orf83 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C2orf83 Gene

Proteomics data for C2orf83 Gene at MOPED

Post-translational modifications for C2orf83 Gene

No Post-translational modifications

Other Protein References for C2orf83 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C2orf83 Gene

Domains for C2orf83 Gene

Protein Domains for C2orf83 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C2orf83 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q53S99

UniProtKB/Swiss-Prot:

CB083_HUMAN :
  • Q53S99
Family:
  • Belongs to the reduced folate carrier (RFC) transporter (TC 2.A.48) family.
genes like me logo Genes that share domains with C2orf83: view

No data available for Gene Families for C2orf83 Gene

Function for C2orf83 Gene

Phenotypes for C2orf83 Gene

GenomeRNAi human phenotypes for C2orf83:
genes like me logo Genes that share phenotypes with C2orf83: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2orf83

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C2orf83 Gene

Localization for C2orf83 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C2orf83 Gene COMPARTMENTS Subcellular localization image for C2orf83 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C2orf83 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with C2orf83: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C2orf83 Gene

Pathways for C2orf83 Gene

SuperPathways for C2orf83 Gene

No Data Available

Interacting Proteins for C2orf83 Gene

Gene Ontology (GO) - Biological Process for C2orf83 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with C2orf83: view

No data available for Pathways by source for C2orf83 Gene

Compounds for C2orf83 Gene

(1) HMDB Compounds for C2orf83 Gene

Compound Synonyms Cas Number PubMed IDs
Folic acid
  • Acifolic
59-30-3
genes like me logo Genes that share compounds with C2orf83: view

Transcripts for C2orf83 Gene

mRNA/cDNA for C2orf83 Gene

(6) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C2orf83 Gene

Chromosome 2 open reading frame 83:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2orf83

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C2orf83
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C2orf83 Gene

No ASD Table

Relevant External Links for C2orf83 Gene

GeneLoc Exon Structure for
C2orf83
ECgene alternative splicing isoforms for
C2orf83

Expression for C2orf83 Gene

mRNA expression in normal human tissues for C2orf83 Gene

mRNA differential expression in normal tissues according to GTEx for C2orf83 Gene

This gene is overexpressed in Testis (13.5) and Brain - Spinal cord (cervical c-1) (5.5).

SOURCE GeneReport for Unigene cluster for C2orf83 Gene Hs.283092

genes like me logo Genes that share expressions with C2orf83: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C2orf83 Gene

Orthologs for C2orf83 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C2orf83 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C2BH2orf83 35
  • 98.81 (n)
  • 97.14 (a)
C2orf83 36
  • 97 (a)
OneToOne
Species with no ortholog for C2orf83:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C2orf83 Gene

ENSEMBL:
Gene Tree for C2orf83 (if available)
TreeFam:
Gene Tree for C2orf83 (if available)

Paralogs for C2orf83 Gene

No data available for Paralogs for C2orf83 Gene

Variants for C2orf83 Gene

Sequence variations from dbSNP and Humsavar for C2orf83 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs968814 -- 227,622,953(-) AAGTC(C/T)ACCCC intron-variant
rs968815 -- 227,622,826(-) GAGGA(C/T)CTGAT intron-variant
rs1568039 -- 227,625,095(-) AAGCC(A/G)GGAGG intron-variant
rs1568040 -- 227,625,047(-) catca(C/T)tattt intron-variant
rs1568041 -- 227,624,845(-) aggct(G/T)caatg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C2orf83 Gene

Variant ID Type Subtype PubMed ID
nsv834560 CNV Loss 17160897
nsv834561 CNV Gain 17160897
esv2721560 CNV Deletion 23290073
nsv213271 CNV Loss 16902084
esv21547 CNV Loss 19812545

Relevant External Links for C2orf83 Gene

HapMap Linkage Disequilibrium report
C2orf83

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C2orf83 Gene

Disorders for C2orf83 Gene

No disorders were found for C2orf83 Gene.

No data available for UniProtKB/Swiss-Prot for C2orf83 Gene

Publications for C2orf83 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  3. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  4. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C2orf83 Gene

Sources for C2orf83 Gene

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