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Aliases for C2orf50 Gene

Aliases for C2orf50 Gene

  • Chromosome 2 Open Reading Frame 50 2 3 5

External Ids for C2orf50 Gene

Previous GeneCards Identifiers for C2orf50 Gene

  • GC02P011190
  • GC02P011123
  • GC02P011273

Summaries for C2orf50 Gene

GeneCards Summary for C2orf50 Gene

C2orf50 (Chromosome 2 Open Reading Frame 50) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2orf50 Gene

Genomics for C2orf50 Gene

Regulatory Elements for C2orf50 Gene

Enhancers for C2orf50 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F011356 1 Ensembl ENCODE 12.3 +224.5 224482 2.2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 FOS C2orf50 PQLC3 ENSG00000226961 ENSG00000230952
GH02F011384 1.4 FANTOM5 Ensembl ENCODE 12.3 +255.5 255509 8.5 PKNOX1 ARID4B SIN3A ZNF48 BRCA1 YY1 CBX5 FOS DEK ZNF263 LINC00570 C2orf50 ROCK2 NTSR2 KCNF1 ENSG00000231403 ENSG00000230952
GH02F011340 0.6 ENCODE 12.3 +210.7 210665 5.7 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207 PQLC3 C2orf50 ROCK2 LOC646050
GH02F011403 0.8 Ensembl ENCODE 12.2 +272.6 272646 4.9 ELF3 ATF1 ARID4B ZNF48 ZSCAN9 RAD21 ZBTB40 FOS CREM MIXL1 C2orf50 ROCK2 LOC105373429 LINC00570
GH02F011480 1 FANTOM5 Ensembl ENCODE 12.2 +350.0 350011 4.3 PKNOX1 ARID4B SIN3A FEZF1 GLI4 DMAP1 ZNF2 YY1 ZNF121 ZNF207 C2orf50 GREB1 LPIN1 LOC100506405 ROCK2 GC02P011518
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C2orf50 on UCSC Golden Path with GeneCards custom track

Promoters for C2orf50 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000585235 48 1400 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 KLF13

Genomic Location for C2orf50 Gene

Chromosome:
2
Start:
11,133,053 bp from pter
End:
11,154,564 bp from pter
Size:
21,512 bases
Orientation:
Plus strand

Genomic View for C2orf50 Gene

Genes around C2orf50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C2orf50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2orf50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2orf50 Gene

Proteins for C2orf50 Gene

  • Protein details for C2orf50 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LR7-CB050_HUMAN
    Recommended name:
    Uncharacterized protein C2orf50
    Protein Accession:
    Q96LR7
    Secondary Accessions:
    • A8K9W3
    • D6W503

    Protein attributes for C2orf50 Gene

    Size:
    162 amino acids
    Molecular mass:
    17838 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C2orf50 Gene

Post-translational modifications for C2orf50 Gene

No Post-translational modifications

Other Protein References for C2orf50 Gene

No data available for DME Specific Peptides for C2orf50 Gene

Domains & Families for C2orf50 Gene

Protein Domains for C2orf50 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C2orf50: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C2orf50 Gene

Function for C2orf50 Gene

Gene Ontology (GO) - Molecular Function for C2orf50 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C2orf50: view

Phenotypes for C2orf50 Gene

genes like me logo Genes that share phenotypes with C2orf50: view

Animal Model Products

miRNA for C2orf50 Gene

miRTarBase miRNAs that target C2orf50

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C2orf50 Gene

Localization for C2orf50 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C2orf50 Gene COMPARTMENTS Subcellular localization image for C2orf50 gene
Compartment Confidence
mitochondrion 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C2orf50 Gene

Pathways & Interactions for C2orf50 Gene

SuperPathways for C2orf50 Gene

No Data Available

Interacting Proteins for C2orf50 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000370997%0d%0a9606.ENSP00000359998%0d%0a
Selected Interacting proteins: ENSP00000370997 Q96LR7-CB050_HUMAN for C2orf50 Gene via STRING UniProtKB IID

Gene Ontology (GO) - Biological Process for C2orf50 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C2orf50 Gene

Transcripts for C2orf50 Gene

mRNA/cDNA for C2orf50 Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C2orf50 Gene

Chromosome 2 open reading frame 50:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C2orf50 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c
SP1:
SP2:
SP3: -

Relevant External Links for C2orf50 Gene

GeneLoc Exon Structure for
C2orf50
ECgene alternative splicing isoforms for
C2orf50

Expression for C2orf50 Gene

mRNA expression in normal human tissues for C2orf50 Gene

mRNA differential expression in normal tissues according to GTEx for C2orf50 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.8) and Brain - Cortex (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of C2orf50 Gene:

C2orf50

SOURCE GeneReport for Unigene cluster for C2orf50 Gene:

Hs.406894
genes like me logo Genes that share expression patterns with C2orf50: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C2orf50 Gene

Orthologs for C2orf50 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C2orf50 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C2AH2orf50 34
  • 98.35 (n)
C2orf50 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C11H2orf50 34 35
  • 82.59 (n)
dog
(Canis familiaris)
Mammalia C17H2orf50 34
  • 80.98 (n)
C2orf50 35
  • 50 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2410004P03Rik 34 16 35
  • 74.83 (n)
rat
(Rattus norvegicus)
Mammalia LOC690276 34
  • 73.87 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia C2orf50 35
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C2orf50 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves C3H2orf50 34
  • 62.79 (n)
C2orf50 35
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C2orf50 35
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c2orf50 34
  • 58.17 (n)
zebrafish
(Danio rerio)
Actinopterygii si:dkey-18j18.3 34
  • 53.56 (n)
C13H2orf50 35
  • 40 (a)
OneToOne
Species where no ortholog for C2orf50 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C2orf50 Gene

ENSEMBL:
Gene Tree for C2orf50 (if available)
TreeFam:
Gene Tree for C2orf50 (if available)

Paralogs for C2orf50 Gene

No data available for Paralogs for C2orf50 Gene

Variants for C2orf50 Gene

Sequence variations from dbSNP and Humsavar for C2orf50 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10164890 -- 11,147,688(+) TGATG(G/T)CTTCT intron-variant, utr-variant-3-prime
rs10166950 -- 11,144,988(+) ttttt(A/T)tttat intron-variant
rs10167546 -- 11,151,735(+) gattc(A/G)agtga intron-variant, downstream-variant-500B
rs10174282 -- 11,153,718(+) AAGGC(A/G)GGTGG intron-variant, upstream-variant-2KB
rs10186686 -- 11,141,373(+) gccaa(C/T)tgcct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C2orf50 Gene

Variant ID Type Subtype PubMed ID
nsv520789 CNV loss 19592680

Variation tolerance for C2orf50 Gene

Residual Variation Intolerance Score: 83.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.39; 81.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C2orf50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C2orf50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C2orf50 Gene

Disorders for C2orf50 Gene

Relevant External Links for C2orf50

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C2orf50

No disorders were found for C2orf50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C2orf50 Gene

Publications for C2orf50 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3 64
  4. A yeast two-hybrid screen reveals that osteopontin associates with MAP1A and MAP1B in addition to other proteins linked to microtubule stability, apoptosis and protein degradation in the human brain. (PMID: 22779921) Long P. … Rose S. (Eur. J. Neurosci. 2012) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for C2orf50 Gene

Sources for C2orf50 Gene

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