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Aliases for C2orf47 Gene

Aliases for C2orf47 Gene

  • Chromosome 2 Open Reading Frame 47 2 3

External Ids for C2orf47 Gene

Previous GeneCards Identifiers for C2orf47 Gene

  • GC02P200528
  • GC02P200820
  • GC02P192672

Summaries for C2orf47 Gene

GeneCards Summary for C2orf47 Gene

C2orf47 (Chromosome 2 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2orf47 Gene

Genomics for C2orf47 Gene

Regulatory Elements for C2orf47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C2orf47 Gene

199,955,317 bp from pter
200,008,540 bp from pter
53,224 bases
Plus strand

Genomic View for C2orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C2orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2orf47 Gene

Proteins for C2orf47 Gene

  • Protein details for C2orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C2orf47, mitochondrial
    Protein Accession:
    Secondary Accessions:
    • Q658V9
    • Q9H671

    Protein attributes for C2orf47 Gene

    291 amino acids
    Molecular mass:
    32545 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C2orf47 Gene

Proteomics data for C2orf47 Gene at MOPED

Post-translational modifications for C2orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C2orf47 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for C2orf47 Gene

Domains for C2orf47 Gene

Protein Domains for C2orf47 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C2orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C2orf47 Gene

Function for C2orf47 Gene

Animal Model Products

CRISPR Products

miRNA for C2orf47 Gene

miRTarBase miRNAs that target C2orf47

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2orf47

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for C2orf47 Gene

Localization for C2orf47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C2orf47 Gene


Subcellular locations from

Jensen Localization Image for C2orf47 Gene COMPARTMENTS Subcellular localization image for C2orf47 gene
Compartment Confidence
mitochondrion 3
peroxisome 2

Gene Ontology (GO) - Cellular Components for C2orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with C2orf47: view

Pathways for C2orf47 Gene

SuperPathways for C2orf47 Gene

No Data Available

Interacting Proteins for C2orf47 Gene

Gene Ontology (GO) - Biological Process for C2orf47 Gene


No data available for Pathways by source for C2orf47 Gene

Transcripts for C2orf47 Gene

mRNA/cDNA for C2orf47 Gene

Unigene Clusters for C2orf47 Gene

Chromosome 2 open reading frame 47:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2orf47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C2orf47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b
SP2: -

Relevant External Links for C2orf47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C2orf47 Gene

mRNA expression in normal human tissues for C2orf47 Gene

Protein differential expression in normal tissues for C2orf47 Gene

This gene is overexpressed in Nasal epithelium (30.7) and Bone (19.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C2orf47 Gene

SOURCE GeneReport for Unigene cluster for C2orf47 Gene Hs.154494

genes like me logo Genes that share expressions with C2orf47: view

Expression partners for C2orf47 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C2orf47 Gene

Orthologs for C2orf47 Gene

This gene was present in the common ancestor of animals.

Orthologs for C2orf47 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C2H2orf47 35
  • 86.72 (n)
  • 80.44 (a)
C2orf47 36
  • 79 (a)
(Canis familiaris)
Mammalia C37H2orf47 35
  • 87.36 (n)
  • 82.53 (a)
-- 36
  • 81 (a)
-- 36
  • 86 (a)
(Mus musculus)
Mammalia 9430016H08Rik 35
  • 81.56 (n)
  • 77.32 (a)
9430016H08Rik 16
9430016H08Rik 36
  • 77 (a)
(Pan troglodytes)
Mammalia C2BH2orf47 35
  • 98.97 (n)
  • 98.63 (a)
C2orf47 36
  • 99 (a)
(Rattus norvegicus)
Mammalia MGC94335 35
  • 80.87 (n)
  • 76.29 (a)
(Monodelphis domestica)
Mammalia C2orf47 36
  • 66 (a)
(Ornithorhynchus anatinus)
Mammalia C2orf47 36
  • 40 (a)
(Gallus gallus)
Aves C2ORF47 35
  • 63.55 (n)
  • 51.87 (a)
C2orf47 36
  • 49 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 55 (a)
-- 36
  • 52 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c2orf47 35
  • 58.55 (n)
  • 50.56 (a)
Str.10159 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.32021 35
(Danio rerio)
Actinopterygii Dr.10129 35
zgc:123096 35
  • 62.17 (n)
  • 58 (a)
C9H2orf47 36
  • 50 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7637 35
fruit fly
(Drosophila melanogaster)
Insecta CG3776 36
  • 22 (a)
Species with no ortholog for C2orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C2orf47 Gene

Gene Tree for C2orf47 (if available)
Gene Tree for C2orf47 (if available)

Paralogs for C2orf47 Gene

No data available for Paralogs for C2orf47 Gene

Variants for C2orf47 Gene

Sequence variations from dbSNP and Humsavar for C2orf47 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs166845 -- 199,958,637(-) TCTAC(A/T)TGGGA intron-variant
rs281767 -- 199,958,558(-) CAGAA(G/T)AGCCT intron-variant
rs281768 -- 199,960,517(-) TTTTT(A/T)AATAT intron-variant
rs1042962 -- 199,963,994(+) TTATC(A/C)CCTTC utr-variant-3-prime, downstream-variant-500B
rs2118548 - 199,963,803(-) TTCTA(A/T)TAATT missense, reference, utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for C2orf47 Gene

Variant ID Type Subtype PubMed ID
nsv875704 CNV Gain 21882294
nsv834510 CNV Loss 17160897

Relevant External Links for C2orf47 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C2orf47 Gene

Disorders for C2orf47 Gene

Relevant External Links for C2orf47

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for C2orf47 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C2orf47 Gene

Publications for C2orf47 Gene

  1. Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia. (PMID: 19176441) Yang J.J. … Relling M.V. (JAMA 2009) 3 48
  2. Open reading frames associated with cancer in the dark matter of the human genome. (PMID: 25048349) Delgado A.P. … Narayanan R. (Cancer Genomics Proteomics 2014) 2 3
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 48
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 48
  5. Genome-wide association study of exercise behavior in Dutch and American adults. (PMID: 19727025) De Moor M.H. … Deng H.W. (Med Sci Sports Exerc 2009) 48

Products for C2orf47 Gene

Sources for C2orf47 Gene

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