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Aliases for C2CD6 Gene

Aliases for C2CD6 Gene

  • C2 Calcium Dependent Domain Containing 6 2 3
  • Amyotrophic Lateral Sclerosis 2 Chromosome Region Candidate 11 2 3 5
  • ALS2CR11 3 4 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 11 2 3
  • Amyotrophic Lateral Sclerosis 2 Chromosomal Region Candidate Gene 11 Protein 3
  • C2 Calcium-Dependent Domain-Containing Protein 6 3
  • Testicular Tissue Protein Li 16 3

External Ids for C2CD6 Gene

Previous HGNC Symbols for C2CD6 Gene

  • ALS2CR11

Summaries for C2CD6 Gene

Entrez Gene Summary for C2CD6 Gene

  • An autosomal recessive form of juvenile amyotrophic lateral sclerosis was originally mapped to a region of chromosome 2 that includes this gene. The encoded protein contains a calcium-dependent membrane targeting C2 domain. This domain is often found in proteins that are involved in membrane trafficking and signal transduction. [provided by RefSeq, Jun 2016]

GeneCards Summary for C2CD6 Gene

C2CD6 (C2 Calcium Dependent Domain Containing 6) is a Protein Coding gene. Diseases associated with C2CD6 include Lateral Sclerosis and Juvenile Amyotrophic Lateral Sclerosis.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2CD6 Gene

Genomics for C2CD6 Gene

Regulatory Elements for C2CD6 Gene

Enhancers for C2CD6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G201572 0.7 FANTOM5 Ensembl 17.2 +46.3 46257 0.7 NR2F1 PPIL3 C2CD6 TMEM237 ALS2CR12 RNU6-651P CFLAR GC02P201580 MTND5P31
GH02G201450 1.1 ENCODE 9.9 +167.0 167003 3.4 HDGF HNRNPUL1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CASP8 STRADB TMEM237 C2CD6 ENO1P4 ALS2CR12 TRAK2 GC02P201507
GH02G201651 0.9 Ensembl ENCODE 11.2 -35.0 -34951 4.6 TBP RFX1 PKNOX1 TAF1 JUN SIN3A CEBPG RAD21 JUND FOS C2CD6 ENO1P4 STRADB ALS2CR12 PPIL3 RNU6-651P MPP4
GH02G201464 0.9 Ensembl ENCODE 10.9 +153.1 153060 3.2 SCRT1 HLF ZIC2 JUND PRDM6 SMARCA4 POLR2A SCRT2 GLIS1 FOS CASP8 STRADB C2CD6 ENO1P4 TMEM237 ALS2CR12 TRAK2 GC02P201507
GH02G201269 0.8 dbSUPER 10.4 +347.6 347634 5.0 HDGF CTCF ZSCAN4 TSC22D4 CEBPG ZNF121 ZNF207 FOS MAFK NFIA CASP8 STRADB ALS2CR12 TRAK2 ENO1P4 C2CD6 TMEM237 CASP10 RNU6-651P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C2CD6 on UCSC Golden Path with GeneCards custom track

Genomic Location for C2CD6 Gene

Chromosome:
2
Start:
201,487,421 bp from pter
End:
201,619,183 bp from pter
Size:
131,763 bases
Orientation:
Minus strand

Genomic View for C2CD6 Gene

Genes around C2CD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C2CD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2CD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2CD6 Gene

Proteins for C2CD6 Gene

  • Protein details for C2CD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53TS8-AL2SA_HUMAN
    Recommended name:
    Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein
    Protein Accession:
    Q53TS8
    Secondary Accessions:
    • C9IZH7
    • E9PGG4
    • Q8NCN6
    • Q96LN4

    Protein attributes for C2CD6 Gene

    Size:
    623 amino acids
    Molecular mass:
    71159 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C2CD6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C2CD6 Gene

Post-translational modifications for C2CD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C2CD6 Gene

Domains & Families for C2CD6 Gene

Gene Families for C2CD6 Gene

Protein Domains for C2CD6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C2CD6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C2CD6: view

No data available for UniProtKB/Swiss-Prot for C2CD6 Gene

Function for C2CD6 Gene

Gene Ontology (GO) - Molecular Function for C2CD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C2CD6: view
genes like me logo Genes that share phenotypes with C2CD6: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C2CD6 Gene

Localization for C2CD6 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C2CD6 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C2CD6 Gene

Pathways & Interactions for C2CD6 Gene

SuperPathways for C2CD6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C2CD6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C2CD6 Gene

Drugs & Compounds for C2CD6 Gene

No Compound Related Data Available

Transcripts for C2CD6 Gene

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C2CD6 Gene

No ASD Table

Relevant External Links for C2CD6 Gene

GeneLoc Exon Structure for
C2CD6
ECgene alternative splicing isoforms for
C2CD6

Expression for C2CD6 Gene

NURSA nuclear receptor signaling pathways regulating expression of C2CD6 Gene:

C2CD6
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C2CD6 Gene

Orthologs for C2CD6 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C2CD6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ALS2CR11 34 35
  • 99.15 (n)
dog
(Canis familiaris)
Mammalia LOC609039 34
  • 81.58 (n)
-- 35
  • 60 (a)
OneToMany
-- 35
  • 35 (a)
OneToMany
cow
(Bos Taurus)
Mammalia ALS2CR11 34 35
  • 80.55 (n)
mouse
(Mus musculus)
Mammalia LOC102636554 34
  • 73.48 (n)
Als2cr11 35
  • 45 (a)
OneToOne
Als2cr11b 16
platypus
(Ornithorhynchus anatinus)
Mammalia ALS2CR11 35
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ALS2CR11 35
  • 46 (a)
OneToOne
Species where no ortholog for C2CD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C2CD6 Gene

ENSEMBL:
Gene Tree for C2CD6 (if available)
TreeFam:
Gene Tree for C2CD6 (if available)

Paralogs for C2CD6 Gene

No data available for Paralogs for C2CD6 Gene

Variants for C2CD6 Gene

Sequence variations from dbSNP and Humsavar for C2CD6 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
VAR_035787 A colorectal cancer sample
rs187328136 Uncertain significance 201,620,400(+) ACTGC(C/T)ATATC upstream-variant-2KB, utr-variant-3-prime
rs192214909 Uncertain significance 201,620,883(+) ACACT(A/G)TTAGT upstream-variant-2KB, utr-variant-3-prime
rs193920769 Uncertain significance 201,487,820(-) GCTTT(C/T)AGGAA reference, missense, utr-variant-3-prime
rs374762322 Uncertain significance 201,620,870(+) TATTA(A/G)TGGGC upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C2CD6 Gene

Variant ID Type Subtype PubMed ID
esv24012 CNV loss 19812545
esv2658936 CNV deletion 23128226
esv2763059 CNV loss 21179565
esv3575325 CNV gain 25503493
esv3593980 CNV loss 21293372
esv3593981 CNV loss 21293372
nsv3111 CNV insertion 18451855
nsv473607 CNV novel sequence insertion 20440878
nsv477193 CNV novel sequence insertion 20440878
nsv507063 OTHER sequence alteration 20534489

Variation tolerance for C2CD6 Gene

Gene Damage Index Score: 5.13; 69.32% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C2CD6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C2CD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C2CD6 Gene

Disorders for C2CD6 Gene

MalaCards: The human disease database

(2) MalaCards diseases for C2CD6 Gene - From: GeneCards

Disorder Aliases PubMed IDs
lateral sclerosis
  • motor neuron disease
juvenile amyotrophic lateral sclerosis
  • amyotrophic lateral sclerosis, juvenile
- elite association - COSMIC cancer census association via MalaCards
Search C2CD6 in MalaCards View complete list of genes associated with diseases

Relevant External Links for C2CD6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C2CD6
genes like me logo Genes that share disorders with C2CD6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C2CD6 Gene

Publications for C2CD6 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. (PMID: 11586298) Hadano S. … Ikeda J.-E. (Nat. Genet. 2001) 2 3 64
  5. Identification and characterization of novel associations in the CASP8/ALS2CR12 region on chromosome 2 with breast cancer risk. (PMID: 25168388) Lin W.Y. … Cox A. (Hum. Mol. Genet. 2015) 3 64

Products for C2CD6 Gene

Sources for C2CD6 Gene

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