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Aliases for C2CD4D Gene

Aliases for C2CD4D Gene

  • C2 Calcium-Dependent Domain Containing 4D 2 3
  • FAM148D 3 4
  • C2 Calcium-Dependent Domain-Containing Protein 4D 3
  • Family With Sequence Similarity 148, Member D 3
  • Family With Sequence Similarity 148 2
  • Member D 2

External Ids for C2CD4D Gene

Previous GeneCards Identifiers for C2CD4D Gene

  • GC01M123187

Summaries for C2CD4D Gene

GeneCards Summary for C2CD4D Gene

C2CD4D (C2 Calcium-Dependent Domain Containing 4D) is a Protein Coding gene. An important paralog of this gene is C2CD4A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2CD4D Gene

Genomics for C2CD4D Gene

Genomic Location for C2CD4D Gene

Start:
151,837,819 bp from pter
End:
151,840,557 bp from pter
Size:
2,739 bases
Orientation:
Minus strand

Genomic View for C2CD4D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C2CD4D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2CD4D Gene

No data available for Regulatory Elements for C2CD4D Gene

Proteins for C2CD4D Gene

  • Protein details for C2CD4D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B7Z1M9-C2D4D_HUMAN
    Recommended name:
    C2 calcium-dependent domain-containing protein 4D
    Protein Accession:
    B7Z1M9
    Secondary Accessions:
    • B2RXG8

    Protein attributes for C2CD4D Gene

    Size:
    353 amino acids
    Molecular mass:
    37583 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C2CD4D Gene

Proteomics data for C2CD4D Gene at MOPED

Post-translational modifications for C2CD4D Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C2CD4D Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C2CD4D Gene

Domains for C2CD4D Gene

Protein Domains for C2CD4D Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C2CD4D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

B7Z1M9

UniProtKB/Swiss-Prot:

C2D4D_HUMAN :
  • B7Z1M9
Domain:
  • Contains 1 C2 domain.
genes like me logo Genes that share domains with C2CD4D: view

No data available for Gene Families for C2CD4D Gene

Function for C2CD4D Gene

Gene Ontology (GO) - Molecular Function for C2CD4D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with C2CD4D: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2CD4D

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C2CD4D Gene

Localization for C2CD4D Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C2CD4D Gene COMPARTMENTS Subcellular localization image for C2CD4D gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C2CD4D Gene

Pathways for C2CD4D Gene

SuperPathways for C2CD4D Gene

No Data Available

Interacting Proteins for C2CD4D Gene

Gene Ontology (GO) - Biological Process for C2CD4D Gene

None

No data available for Pathways by source for C2CD4D Gene

Transcripts for C2CD4D Gene

mRNA/cDNA for C2CD4D Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C2CD4D Gene

C2 calcium-dependent domain containing 4D:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C2CD4D

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C2CD4D Gene

No ASD Table

Relevant External Links for C2CD4D Gene

GeneLoc Exon Structure for
C2CD4D
ECgene alternative splicing isoforms for
C2CD4D

Expression for C2CD4D Gene

mRNA expression in normal human tissues for C2CD4D Gene

mRNA differential expression in normal tissues according to GTEx for C2CD4D Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (5.8) and Skin - Not Sun Exposed (Suprapubic) (4.2).

SOURCE GeneReport for Unigene cluster for C2CD4D Gene Hs.694717

genes like me logo Genes that share expressions with C2CD4D: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for C2CD4D Gene

Orthologs for C2CD4D Gene

This gene was present in the common ancestor of chordates.

Orthologs for C2CD4D Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C2CD4D 35
  • 84.78 (n)
  • 84.39 (a)
C2CD4D 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia C2cd4d 35
  • 81.23 (n)
  • 81.82 (a)
C2cd4d 16
C2cd4d 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C2CD4D 35
  • 99.53 (n)
  • 99.43 (a)
C2CD4D 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia C2cd4d 35
  • 81.23 (n)
  • 82.7 (a)
oppossum
(Monodelphis domestica)
Mammalia C2CD4D 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C2CD4D 36
  • 45 (a)
OneToOne
Species with no ortholog for C2CD4D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C2CD4D Gene

ENSEMBL:
Gene Tree for C2CD4D (if available)
TreeFam:
Gene Tree for C2CD4D (if available)

Paralogs for C2CD4D Gene

Paralogs for C2CD4D Gene

genes like me logo Genes that share paralogs with C2CD4D: view

Variants for C2CD4D Gene

Sequence variations from dbSNP and Humsavar for C2CD4D Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs6587621 -- 151,841,758(+) AAGCA(A/G)TGGGA upstream-variant-2KB
rs6587623 -- 151,841,993(+) TATCA(C/T)GGGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C2CD4D Gene

Variant ID Type Subtype PubMed ID
nsv516369 CNV Gain 19592680

Relevant External Links for C2CD4D Gene

HapMap Linkage Disequilibrium report
C2CD4D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C2CD4D Gene

Disorders for C2CD4D Gene

No disorders were found for C2CD4D Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for C2CD4D Gene

Publications for C2CD4D Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for C2CD4D Gene

Sources for C2CD4D Gene

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