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C2CD2L Gene

protein-coding   GIFtS: 48
GCID: GC11P118978

C2CD2-Like

(Previous name: transmembrane protein 24)
(Previous symbol: TMEM24)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
C2CD2-like1 2
Transmembrane Protein 241 2 3
TMEM241 2 3
C2 Domain-Containing Protein 2-Like2
KIAA02853

External Ids:    HGNC: 290001   Entrez Gene: 98542   Ensembl: ENSG000001723757   UniProtKB: O145233   

Export aliases for C2CD2L gene to outside databases

Previous GC identifers: GC11P118484 GC11P114917


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C2CD2L Gene:
C2CD2L (C2CD2-like) is a protein-coding gene. An important paralog of this gene is C2CD2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NT_033899.9  NC_018922.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the C2CD2L gene promoter:
         c-Fos   GATA-3   p53   AP-1   GATA-2   GATA-1   YY1   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC2CD2L promoter sequence
   Search Chromatin IP Primers for C2CD2L

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C2CD2L


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.3   Ensembl cytogenetic band:  11q23.3   HGNC cytogenetic band: 11q23.3

C2CD2L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C2CD2L gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P118978:  view genomic region     (about GC identifiers)

Start:
118,972,908 bp from pter      End:
118,989,252 bp from pter
Size:
16,345 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: C2C2L_HUMAN, O14523 (See protein sequence)
Recommended Name: C2 domain-containing protein 2-like  
Size: 706 amino acids; 76181 Da
Sequence caution: Sequence=AAH10071.2; Type=Erroneous initiation; Sequence=AAH21254.2; Type=Erroneous initiation;
Secondary accessions: Q86UT7 Q86V04 Q8N522 Q8TBN4 Q96G10
Alternative splicing: 2 isoforms:  O14523-1   O14523-2   

Explore the universe of human proteins at neXtProt for C2CD2L: NX_O14523

Explore proteomics data for C2CD2L at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys271
  • Modification sites at PhosphoSitePlus

  • See C2CD2L Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001277403.1  NP_055622.3  

    ENSEMBL proteins: 
     ENSP00000338885   ENSP00000433600  

    C2CD2L Human Recombinant Protein Products:

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    antibodies-online peptides for C2CD2L

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    antibodies-online antibodies for C2CD2L (7 products) 

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    antibodies-online kits for C2CD2L (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR000008 C2_dom

    Graphical View of Domain Structure for InterPro Entry O14523

    ProtoNet protein and cluster: O14523


    Find genes that share domains with C2CD2L           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0005515protein binding ----
         
    Find genes that share ontologies with C2CD2L           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for C2CD2L:
     Increased gamma-H2AX phosphory 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for C2CD2L

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate C2CD2L (see all 32):
    hsa-miR-1321 hsa-miR-3908 hsa-miR-3144-5p hsa-miR-30c-2* hsa-miR-324-3p hsa-miR-3120-3p hsa-miR-4306 hsa-miR-3175
    SwitchGear 3'UTR luciferase reporter plasmidC2CD2L 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    C2C2L_HUMAN, O14523: Membrane; Single-pass membrane protein (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular2
    plasma membrane2
    cytosol1
    endoplasmic reticulum1
    golgi apparatus1
    mitochondrion1
    nucleus1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with C2CD2L           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C2CD2L
    Interactions:

        Search GeneGlobe Interaction Network for C2CD2L

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for C2CD2L (O145233 ENSP000003388854) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EPB41P111713, ENSP000002901004I2D: score=1 STRING: ENSP00000290100
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with C2CD2L           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C2CD2L (C2C2L)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for C2CD2L gene (2 alternative transcripts): 
    NM_001290474.1  NM_014807.4  

    Unigene Cluster for C2CD2L:

    C2CD2-like
    Hs.26899  [show with all ESTs]
    Unigene Representative Sequence: NM_014807
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000534024 ENST00000528271 ENST00000529600 ENST00000529885 ENST00000527854
    ENST00000336702(uc001pvn.3 uc001pvo.3) ENST00000529874 ENST00000525598
    ENST00000528586 ENST00000533458
    miRNA
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    Block miRNA regulation of human, mouse, rat C2CD2L using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate C2CD2L (see all 32):
    hsa-miR-1321 hsa-miR-3908 hsa-miR-3144-5p hsa-miR-30c-2* hsa-miR-324-3p hsa-miR-3120-3p hsa-miR-4306 hsa-miR-3175
    SwitchGear 3'UTR luciferase reporter plasmidC2CD2L 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat C2CD2L
      QuantiFast Probe-based Assays in human, mouse, rat C2CD2L

    Additional mRNA sequence: 

    AB006623.2 AB094094.1 AK025223.1 BC003598.1 BC010071.2 BC021254.2 BC022219.1 BC033083.1 
    BC040131.1 BC052246.1 BC075832.1 

    10 DOTS entries:

    DT.95200692  DT.455487  DT.100845813  DT.101982557  DT.120710433  DT.91831681  DT.92426179  DT.455486 
    DT.100785092  DT.95370586 

    Selected AceView cDNA sequences (see all 128):

    AW105306 AI160178 BU623225 CD242553 BC033083 CD242710 BC010071 BI964102 
    BE045355 BM672166 NM_014807 D31478 BC003598 CR615888 AB094094 AI399936 
    BE260059 BM545436 BE312719 BC052246 BC021254 D81760 CK903758 BM692996 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for C2CD2L    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14
    SP1:                                                                                                                        
    SP2:                                                                                                                        
    SP3:                                                                                                                        
    SP4:                                                                                                                        
    SP5:                                                                                                                        


    ECgene alternative splicing isoforms for C2CD2L

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    C2CD2L expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    C2CD2L Expression
    About this image


    C2CD2L expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Brain (Nervous System)    fully expand to see all 18 entries
             Thalamus
             Septum   
    C2CD2L Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C2CD2L Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.26899
        Custom PCR Arrays for C2CD2L
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for C2CD2L gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia C2cd2l1 , 5 C2 calcium-dependent domain containing 2-like1, 5 88.24(n)1
    90.79(a)1
      9 (24.84 cM)5
    717641  NM_027909.21  NP_082185.21 
     443092375 
    chicken
    (Gallus gallus)
    Aves C2CD2L1 C2CD2-like 65.6(n)
    64.49(a)
      428233  XM_425792.4  XP_425792.3 
    lizard
    (Anolis carolinensis)
    Reptilia C2CD2L6
    C2CD2-like
    53(a)
    1 ↔ 1
    GL344481.1(26807-30844)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.105172 Xenopus laevis transcribed sequences 72.53(n)    BJ622404.1 
    zebrafish
    (Danio rerio)
    Actinopterygii c2cd2l1 c2cd2-like 59.48(n)
    55.24(a)
      566488  NM_001077383.1  NP_001070851.1 


    ENSEMBL Gene Tree for C2CD2L (if available)
    TreeFam Gene Tree for C2CD2L (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for C2CD2L gene
    C2CD22  
    1 SIMAP similar gene for C2CD2L using alignment to 4 protein entries:     C2C2L_HUMAN (see all proteins):
    C2CD2

    Find genes that share paralogs with C2CD2L           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for C2CD2L (see all 304)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1446241351,2
    --118976105(+) GCACTC/TTGGGA 1 -- us2k10--------
    rs1850167551,2
    --118976108(+) CTTTGA/GGAGGC 1 -- us2k10--------
    rs1887258311,2
    --118976167(+) AACATG/TGTGAA 1 -- us2k10--------
    rs1478962641,2
    --118976175(+) GAAACA/CCTGTC 1 -- us2k10--------
    rs1399985741,2
    --118976307(+) ATCTCA/GCTACT 1 -- us2k10--------
    rs1124411041,2
    C--118976358(+) AAGAG-/AAAAAA 1 -- us2k11Minor allele frequency- A:0.00CSA 2
    rs1455385061,2
    --118976503(+) AAAGAA/GGTCAG 1 -- us2k10--------
    rs792317281,2
    F--118976521(+) AGATCA/TCTAGG 1 -- us2k11Minor allele frequency- T:0.02WA 118
    rs1930567081,2
    --118976660(+) TGCATC/TCCTGG 1 -- us2k10--------
    rs1453680331,2
    --118976664(+) TCCCTG/TGTTCT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for C2CD2L (118972908 - 118989252 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for C2CD2L:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv468879CNV Loss19166990
    nsv898416CNV Loss21882294
    nsv514CNV Loss18451855

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing C2CD2L
    DNA2.0 Custom Variant and Variant Library Synthesis for C2CD2L

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C2CD2L gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with C2CD2L)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of TMEM24 family genes in silico. (PubMed id 15289880)1, 3, 9 Katoh M. and Katoh M. (Int. J. Oncol. 2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)1, 2 Nakajima D.... Nagase T. (DNA Res. 2002)
    4. Construction and characterization of human brain cDNA libraries suitable for analysis of cDNA clones encoding relatively large proteins. (PubMed id 9179496)1, 2 Ohara O....Nomura N. (DNA Res. 1997)
    5. Insulin biosynthetic interaction network component, TMEM24, facilitates insulin reserve pool release. (PubMed id 24012759)1 Pottekat A....Balch W.E. (Cell Rep 2013)
    6. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    7. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    8. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    9. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    10. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (Cell 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 9854 HGNC: 29000 AceView: TMEM24 Ensembl:ENSG00000172375 euGenes: HUgn9854
    ECgene: C2CD2L H-InvDB: C2CD2L

    (According to HUGE)
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    HUGE: KIAA0285

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C2CD2L Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for C2CD2L gene:
    Search GeneIP for patents involving C2CD2L

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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