C2CD2 Gene
protein-coding GIFtS : 44
GCID: GC21 M043306
C2 calcium-dependent domain containing 2 (Previous name: chromosome 21 open reading frame 25 ) (Previous symbol: C21orf25 )
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Aliasesfor C2CD2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases C2 Calcium-Dependent Domain Containing 2 1 2 DKFZP586F04221 C21orf251 2 3 Chromosome 21 Open Reading Frame 251 C21orf2581 2 3 C2 Domain-Containing Protein 22 TMEM24L1 2 TMEM24 Related Geme2
Export aliases for C2CD2 gene to outside databases Previous GC identifers: GC21M042179 GC21M028723
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Summariesfor C2CD2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Viewsfor C2CD2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000021.8 NC_018932.1 NT_011515.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the C2CD2 gene promoter: GATA-3 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) POU3F2 NF-E2 p45 GATA-1 GATA-2 AREB6 PPAR-alpha NF-E2 Other transcription factors Search SABiosciences Chromatin IP Primers for C2CD2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat C2CD2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 21q22.3 Ensembl cytogenetic band: 21q22.3 HGNC cytogenetic band: 21q22.3 C2CD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 21 GeneLoc Exon Structure
GeneLoc location for GC21M043306: view genomic region
(about GC identifiers )
Start:
43,305,219 bp from pter
End:
43,373,999 bp from pter
Size:
68,781 bases
Orientation:
minus strand
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Proteinsfor C2CD2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CU025_HUMAN, Q9Y426 (See
protein sequence )Recommended Name: C2 domain-containing protein 2 precursor Size : 696 amino acids; 75533 Da
Subcellular location : Secreted (Potential)
Sequence caution : Sequence=BAA95528.1; Type=Erroneous gene model prediction; Sequence=CAH10536.1; Type=Miscellaneousdiscrepancy; Note=Intron retention;
Secondary accessions : Q5R2V7 Q6AHX8 Q9NSE6Alternative splicing : 3 isoforms : Q9Y426-1 Q9Y426-2 Q9Y426-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for C2CD2: NX_Q9Y426 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9Y426 C2CD2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_056315.1 NP_950251.1 ENSEMBL proteins: ENSP00000388704 ENSP00000329302 ENSP00000369853 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
C2CD2 for ontologies About GeneDecksing C2CD2 Antibody Products: Assay Products for C2CD2:
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Protein
Domains / Familiesfor C2CD2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
C2CD2 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9Y426 ProtoNet protein and cluster: Q9Y426
1 Blocks protein family : IPB000008 C2 domain UniProtKB/Swiss-Prot: CU025_HUMAN, Q9Y426 Similarity : Contains 1 C2 domain
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Functionfor C2CD2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: C2CD2 (NM_014807 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C2CD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C2CD2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C2CD2
1 GenomeRNAi human phenotype for C2CD2 :
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Pathways & Interactionsfor C2CD2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C2CD2 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for C2CD2 (ENSP00000369853 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor C2CD2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for C2CD2 Search CenterWatch for drugs/clinical trials and news about C2CD2 / CU025
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Transcriptsfor C2CD2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for C2CD2 gene (2 alternative transcripts): NM_015500.1 NM_199050.2 Unigene Clusters for C2CD2:
C2 calcium-dependent domain containing 2 Hs.473894 [show with all ESTs ] , Hs.675058 [show with all ESTs ] Unigene Representative Sequences: NM_015500 , AK129520 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000449165 ENST00000329623 (uc002yzs.3 uc002yzt.3 uc002yzu.3 uc002yzv.3 )ENST00000380486 (uc002yzw.3 ) ENST00000482186 ENST00000482084 ENST00000467074 (uc002yzx.1 )ENST00000490479 ENST00000478372 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: C2CD2 (NM_014807 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C2CD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C2CD2
Additional cDNA sequence: AK129520.1
11 DOTS entries : DT.92425939 DT.314791
DT.91746031 DT.95115516 DT.40190688 DT.100782488 DT.101974274 DT.92425938 DT.92425940 DT.40299780 DT.86836116 24/141 AceView cDNA sequences (see all 141 ):
BC062323 AL833323 CA389473 AI523354 CA418044 AI168265 NM_199050 BM754719 BM051485 CD655727 AA346439 Z43345 BU728212 CD652977 AW150801 BF439399 BG741299 CF454915 AA724852 AL050173 AI801057 BM739460 AA373841 AA610864 GeneLoc Exon Structure
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Expression for C2CD2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section C2CD2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image C2CD2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category PureStem™ progenitor EN27 (Embryonic Progenitor Cell)Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See C2CD2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for C2CD2 SOURCE GeneReport for Unigene clusters: Hs.473894 Hs.675058 SABiosciences Custom PCR Arrays for C2CD2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C2CD2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat C2CD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C2CD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C2CD2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C2CD2
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Orthologsfor C2CD2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for C2CD2 gene from 4/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for C2CD2 (if available)TreeFam Gene Tree for C2CD2 (if available)
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Paralogsfor C2CD2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for C2CD2 gene C2CD2L 2 1 SIMAP similar gene for C2CD2 using alignment to 3 protein entries: CU025_HUMAN (see all proteins ):C2CD2L
C2CD2 for paralogs About GeneDecksing
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Genomic Variantsfor C2CD2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 21 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for C2CD2 (43305219 - 43373999 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for C2CD2 2 CNVs : 67794 10602
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C2CD2
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Disorders
/ Diseasesfor C2CD2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
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Publicationsfor C2CD2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for C2CD2 gene integrated from 9 sources : (articles sorted by number of sources associating them with C2CD2) Utopia : connect your pdf to the dynamic world of online information
Identification and characterization of TMEM24 family genes in silico. (PubMed id 15289880) 1 , 3, 9 Katoh M. and Katoh M. (2004) The DNA sequence of human chromosome 21. (PubMed id 10830953) 1 , 2 Hattori M....Yaspo M.L. (2000) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Functional analysis and identification of cis-regulat ory elements of human chromosome 21 gene promoters. (PubMed id 20494980) 1 Warnatz H.J....Yaspo M.L. (2010) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PubMed id 16780588) 1 Hu Y.H....Janitz M. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000)
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External Searches for C2CD2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing C2CD2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing C2CD2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing C2CD2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for C2CD2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for C2CD2 gene: Search GeneIP for patents involving C2CD2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor C2CD2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for C2CD2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for C2CD2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C2CD2 OriGene Protein Over-expression Lysate for C2CD2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for C2CD2 OriGene 3'-UTR Clone for C2CD2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C2CD2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for C2CD2 OriGene Custom Protein Services for C2CD2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C2CD2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C2CD2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat C2CD2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat C2CD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C2CD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C2CD2
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C2CD2
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C2CD2
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