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Aliases for C22orf15 Gene

Aliases for C22orf15 Gene

  • Chromosome 22 Open Reading Frame 15 2 3
  • Protein N27C7-3 3 4
  • Uncharacterized Protein C22orf15 3
  • N27C7-3 3

External Ids for C22orf15 Gene

Summaries for C22orf15 Gene

GeneCards Summary for C22orf15 Gene

C22orf15 (Chromosome 22 Open Reading Frame 15) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C22orf15 Gene

Genomics for C22orf15 Gene

Genomic Location for C22orf15 Gene

Start:
23,762,875 bp from pter
End:
23,765,863 bp from pter
Size:
2,989 bases
Orientation:
Plus strand

Genomic View for C22orf15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C22orf15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C22orf15 Gene

Regulatory Elements for C22orf15 Gene

Proteins for C22orf15 Gene

  • Protein details for C22orf15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WYQ4-CV015_HUMAN
    Recommended name:
    Uncharacterized protein C22orf15
    Protein Accession:
    Q8WYQ4
    Secondary Accessions:
    • Q6ICJ7

    Protein attributes for C22orf15 Gene

    Size:
    148 amino acids
    Molecular mass:
    16487 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C22orf15 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C22orf15 Gene

Proteomics data for C22orf15 Gene at MOPED

Post-translational modifications for C22orf15 Gene

No Post-translational modifications

Other Protein References for C22orf15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C22orf15 Gene

Domains for C22orf15 Gene

Protein Domains for C22orf15 Gene

ProtoNet:
genes like me logo Genes that share domains with C22orf15: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C22orf15 Gene

Function for C22orf15 Gene

genes like me logo Genes that share phenotypes with C22orf15: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C22orf15 Gene

Localization for C22orf15 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C22orf15 Gene COMPARTMENTS Subcellular localization image for C22orf15 gene
Compartment Confidence
extracellular 2
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for C22orf15 Gene

Pathways for C22orf15 Gene

SuperPathways for C22orf15 Gene

No Data Available

Interacting Proteins for C22orf15 Gene

Gene Ontology (GO) - Biological Process for C22orf15 Gene

None

No data available for Pathways by source for C22orf15 Gene

Transcripts for C22orf15 Gene

Unigene Clusters for C22orf15 Gene

Chromosome 22 open reading frame 15:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C22orf15 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: - - -
SP2: - - - -
SP3:

Relevant External Links for C22orf15 Gene

GeneLoc Exon Structure for
C22orf15
ECgene alternative splicing isoforms for
C22orf15

Expression for C22orf15 Gene

mRNA expression in normal human tissues for C22orf15 Gene

mRNA differential expression in normal tissues according to GTEx for C22orf15 Gene

This gene is overexpressed in Testis (8.1), Fallopian Tube (5.1), Lung (4.6), and Pituitary (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C22orf15 Gene

SOURCE GeneReport for Unigene cluster for C22orf15 Gene Hs.116254

genes like me logo Genes that share expressions with C22orf15: view

Orthologs for C22orf15 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C22orf15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C22H22orf15 36
  • 99.1 (n)
  • 99.32 (a)
C22orf15 37
  • 59 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17H22orf15 36
  • 76.26 (n)
  • 63.01 (a)
C22orf15 37
  • 52 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C22orf15 37
  • 66 (a)
OneToOne
C26H22orf15 36
  • 77.08 (n)
  • 68.06 (a)
mouse
(Mus musculus)
Mammalia Gm867 36
  • 69.27 (n)
  • 59.57 (a)
Gm867 16
Gm867 37
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C22orf15 37
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1564162 36
  • 68.81 (n)
  • 60 (a)
Species with no ortholog for C22orf15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C22orf15 Gene

ENSEMBL:
Gene Tree for C22orf15 (if available)
TreeFam:
Gene Tree for C22orf15 (if available)

Paralogs for C22orf15 Gene

No data available for Paralogs for C22orf15 Gene

Variants for C22orf15 Gene

Sequence variations from dbSNP and Humsavar for C22orf15 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs140181 -- 23,764,487(+) TGTCC(A/G)GCCTC intron-variant
rs179465 -- 23,763,821(+) GGCGC(C/G)CACTT intron-variant, upstream-variant-2KB
rs2298374 -- 23,763,985(+) GCCCA(A/G)TCGCA intron-variant, missense, reference, upstream-variant-2KB
rs2298375 -- 23,764,261(+) CCAGC(A/G)ACCAT synonymous-codon, reference, upstream-variant-2KB
rs2330621 -- 23,763,087(+) GGAGT(C/T)TTGGA utr-variant-5-prime, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C22orf15 Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER Inversion 18451855
esv2724041 CNV Deletion 23290073
nsv526567 CNV Gain 19592680
dgv4906n71 CNV Gain 21882294
nsv914597 CNV Loss 21882294

Relevant External Links for C22orf15 Gene

HapMap Linkage Disequilibrium report
C22orf15

Disorders for C22orf15 Gene

No disorders were found for C22orf15 Gene.

No data available for UniProtKB/Swiss-Prot for C22orf15 Gene

Publications for C22orf15 Gene

  1. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3 4
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for C22orf15 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C22orf15
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for C22orf15
  • Block miRNA regulation of C22orf15 using miScript Target Protectors

Sources for C22orf15 Gene

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