Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C21orf91-OT1 Gene

Subcategory (RNA class) for C21orf91-OT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C21orf91-OT1 Gene

  • C21orf91 Overlapping Transcript 1 2 3 5
  • C21orf91 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 285 2
  • NCRNA00285 3
  • D21S2089E 3

External Ids for C21orf91-OT1 Gene

Previous HGNC Symbols for C21orf91-OT1 Gene

  • NCRNA00285

Previous GeneCards Identifiers for C21orf91-OT1 Gene

  • GC21U900433
  • GC21M019137

Summaries for C21orf91-OT1 Gene

GeneCards Summary for C21orf91-OT1 Gene

C21orf91-OT1 (C21orf91 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C21orf91-OT1 Gene

Genomics for C21orf91-OT1 Gene

Regulatory Elements for C21orf91-OT1 Gene

Enhancers for C21orf91-OT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G017779 1.8 FANTOM5 Ensembl ENCODE dbSUPER 19.1 +8.8 8766 8.7 HDGF FOXA2 WRNIP1 YY1 CBX5 ZNF143 FOS JUNB TBX21 NBN C21orf91-OT1 C21orf91 BTG3 LOC105372741
GH21G017793 1.3 Ensembl ENCODE dbSUPER 15 -2.4 -2380 3.7 SOX13 FOXA2 JUN MAX CEBPG RAD21 YY1 NCOR1 HNF4G FOS C21orf91-OT1 ENSG00000244676 C21orf91
GH21G017788 1 ENCODE dbSUPER 19.2 +2.7 2693 2.5 TBL1XR1 RELA ARID3A ETV6 RELB IKZF2 CREM MTA2 ZBED1 CBFB C21orf91-OT1 CHODL LOC105372741
GH21G017847 1.1 FANTOM5 ENCODE 11.1 -56.0 -56037 1.6 PKNOX1 TBL1XR1 SIN3A CBX5 FOS RELB ETV6 IKZF2 CREM CBFB CHODL CHODL-AS1 RPL37P3 ENSG00000244676 C21orf91-OT1
GH21G017817 1.3 ENCODE dbSUPER 9.2 -26.8 -26785 4.2 HNRNPUL1 CREB3L1 ARNT WRNIP1 SIN3A DMAP1 YY1 ZNF143 ZNF207 SP3 C21orf91-OT1 CHODL C21orf91 ENSG00000244676
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C21orf91-OT1 Gene

Chromosome:
21
Start:
17,763,315 bp from pter
End:
17,792,523 bp from pter
Size:
29,209 bases
Orientation:
Minus strand

Genomic View for C21orf91-OT1 Gene

Genes around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C21orf91-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C21orf91-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C21orf91-OT1 Gene

Proteins for C21orf91-OT1 Gene

Post-translational modifications for C21orf91-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C21orf91-OT1 Gene

Domains & Families for C21orf91-OT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C21orf91-OT1 Gene

Function for C21orf91-OT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C21orf91-OT1 Gene

Localization for C21orf91-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C21orf91-OT1 Gene

Pathways & Interactions for C21orf91-OT1 Gene

SuperPathways for C21orf91-OT1 Gene

No Data Available

Interacting Proteins for C21orf91-OT1 Gene

Gene Ontology (GO) - Biological Process for C21orf91-OT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C21orf91-OT1 Gene

Drugs & Compounds for C21orf91-OT1 Gene

No Compound Related Data Available

Transcripts for C21orf91-OT1 Gene

mRNA/cDNA for C21orf91-OT1 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C21orf91-OT1 Gene

C21orf91 overlapping transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C21orf91-OT1 Gene

No ASD Table

Relevant External Links for C21orf91-OT1 Gene

GeneLoc Exon Structure for
C21orf91-OT1
ECgene alternative splicing isoforms for
C21orf91-OT1

Expression for C21orf91-OT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C21orf91-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for C21orf91-OT1 Gene

This gene is overexpressed in Testis (x10.0) and Brain - Spinal cord (cervical c-1) (x4.1).

SOURCE GeneReport for Unigene cluster for C21orf91-OT1 Gene:

Hs.473425
genes like me logo Genes that share expression patterns with C21orf91-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C21orf91-OT1 Gene

Orthologs for C21orf91-OT1 Gene

Evolution for C21orf91-OT1 Gene

ENSEMBL:
Gene Tree for C21orf91-OT1 (if available)
TreeFam:
Gene Tree for C21orf91-OT1 (if available)

No data available for Orthologs for C21orf91-OT1 Gene

Paralogs for C21orf91-OT1 Gene

No data available for Paralogs for C21orf91-OT1 Gene

Variants for C21orf91-OT1 Gene

Sequence variations from dbSNP and Humsavar for C21orf91-OT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000348211 -- 17,792,743(+) AATAC(C/T)GCTTT upstream-variant-2KB, utr-variant-3-prime
rs1000974874 -- 17,780,469(+) TTTGC(C/T)CCAGC intron-variant
rs1000978063 -- 17,778,996(+) TCTTA(C/T)GAAAA intron-variant
rs1000987064 -- 17,784,875(+) CTTCT(A/G)AACGG intron-variant
rs1001128443 -- 17,787,103(+) ACAGG(A/C/T)CTTCT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for C21orf91-OT1 Gene

Variant ID Type Subtype PubMed ID
nsv1059861 CNV loss 25217958
nsv834055 CNV gain 17160897
nsv953347 CNV duplication 24416366

Relevant External Links for C21orf91-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C21orf91-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C21orf91-OT1 Gene

Disorders for C21orf91-OT1 Gene

Relevant External Links for C21orf91-OT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C21orf91-OT1

No disorders were found for C21orf91-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C21orf91-OT1 Gene

Publications for C21orf91-OT1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 2 3 64

Products for C21orf91-OT1 Gene

Sources for C21orf91-OT1 Gene

Content
Loading form....