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Aliases for C21orf91-OT1 Gene

Subcategory (RNA class) for C21orf91-OT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C21orf91-OT1 Gene

  • C21orf91 Overlapping Transcript 1 2 3 5
  • C21orf91 Overlapping Transcript 1 (Non-Protein Coding) 2
  • Non-Protein Coding RNA 285 2
  • NCRNA00285 3
  • D21S2089E 3

External Ids for C21orf91-OT1 Gene

Previous HGNC Symbols for C21orf91-OT1 Gene

  • NCRNA00285

Previous GeneCards Identifiers for C21orf91-OT1 Gene

  • GC21U900433
  • GC21M019137

Summaries for C21orf91-OT1 Gene

GeneCards Summary for C21orf91-OT1 Gene

C21orf91-OT1 (C21orf91 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C21orf91-OT1 Gene

Genomics for C21orf91-OT1 Gene

Regulatory Elements for C21orf91-OT1 Gene

Enhancers for C21orf91-OT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F017788 0.9 Ensembl ENCODE 19.2 +2.8 2782 2.7 TBL1XR1 MTA2 TRIM22 TBX21 EP300 GABPA RELA RAD51 IKZF1 MYB C21orf91-OT1 CHODL LOC105372741
GH21F017779 0.9 FANTOM5 Ensembl ENCODE 19.1 +8.8 8766 8.7 HDGF TBP TBL1XR1 WRNIP1 BMI1 YY1 CBX5 ZNF143 ETV6 FOS C21orf91-OT1 C21orf91 BTG3 LOC105372741
GH21F017793 1.1 Ensembl ENCODE 15 -2.4 -2380 3.7 SOX13 JUN CEBPG RAD21 YY1 HNF4G ETV6 FOS GATAD2A SOX5 C21orf91-OT1 LOC105372743 C21orf91
GH21F017798 0.7 FANTOM5 ENCODE 13 -6.8 -6799 1.7 C21orf91-OT1 CHODL C21orf91 LOC105372743
GH21F017847 1.2 FANTOM5 ENCODE 11.1 -56.0 -56037 1.6 PKNOX1 MXI1 USF1 TBL1XR1 JUN SIN3A CBX5 EED ETV6 FOS CHODL CHODL-AS1 RPL37P3 LOC105372743 C21orf91-OT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Promoters for C21orf91-OT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001839757 -1477 801 SMARCA4 JUNB ETV6 FOXP2

Genomic Location for C21orf91-OT1 Gene

Chromosome:
21
Start:
17,763,315 bp from pter
End:
17,792,523 bp from pter
Size:
29,209 bases
Orientation:
Minus strand

Genomic View for C21orf91-OT1 Gene

Genes around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C21orf91-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C21orf91-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C21orf91-OT1 Gene

Proteins for C21orf91-OT1 Gene

Post-translational modifications for C21orf91-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C21orf91-OT1 Gene

Domains & Families for C21orf91-OT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C21orf91-OT1 Gene

Function for C21orf91-OT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C21orf91-OT1 Gene

Localization for C21orf91-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C21orf91-OT1 Gene

Pathways & Interactions for C21orf91-OT1 Gene

SuperPathways for C21orf91-OT1 Gene

No Data Available

Interacting Proteins for C21orf91-OT1 Gene

Gene Ontology (GO) - Biological Process for C21orf91-OT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C21orf91-OT1 Gene

Transcripts for C21orf91-OT1 Gene

mRNA/cDNA for C21orf91-OT1 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C21orf91-OT1 Gene

C21orf91 overlapping transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C21orf91-OT1 Gene

No ASD Table

Relevant External Links for C21orf91-OT1 Gene

GeneLoc Exon Structure for
C21orf91-OT1
ECgene alternative splicing isoforms for
C21orf91-OT1

Expression for C21orf91-OT1 Gene

mRNA expression in normal human tissues for C21orf91-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for C21orf91-OT1 Gene

This gene is overexpressed in Testis (x10.0) and Brain - Spinal cord (cervical c-1) (x4.1).

SOURCE GeneReport for Unigene cluster for C21orf91-OT1 Gene:

Hs.473425
genes like me logo Genes that share expression patterns with C21orf91-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C21orf91-OT1 Gene

Orthologs for C21orf91-OT1 Gene

Evolution for C21orf91-OT1 Gene

ENSEMBL:
Gene Tree for C21orf91-OT1 (if available)
TreeFam:
Gene Tree for C21orf91-OT1 (if available)

No data available for Orthologs for C21orf91-OT1 Gene

Paralogs for C21orf91-OT1 Gene

No data available for Paralogs for C21orf91-OT1 Gene

Variants for C21orf91-OT1 Gene

Sequence variations from dbSNP and Humsavar for C21orf91-OT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1062202 -- 17,792,325(-) GATTG(C/T)TCTAC intron-variant, utr-variant-3-prime
rs1062204 -- 17,792,211(-) ATTGT(C/G)CCAAA intron-variant, utr-variant-3-prime
rs10626670 -- 17,781,434(+) TTTTC(-/CAA)CAACT intron-variant
rs1072162 -- 17,780,563(-) TTCCT(C/T)TGGAA intron-variant
rs11088653 -- 17,785,058(+) AGCAC(C/T)TTACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C21orf91-OT1 Gene

Variant ID Type Subtype PubMed ID
nsv1059861 CNV loss 25217958
nsv834055 CNV gain 17160897
nsv953347 CNV duplication 24416366

Relevant External Links for C21orf91-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C21orf91-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C21orf91-OT1 Gene

Disorders for C21orf91-OT1 Gene

Relevant External Links for C21orf91-OT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C21orf91-OT1

No disorders were found for C21orf91-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C21orf91-OT1 Gene

Publications for C21orf91-OT1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 2 3 64

Products for C21orf91-OT1 Gene

Sources for C21orf91-OT1 Gene

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