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Aliases for C21orf91-OT1 Gene

Subcategory (RNA class) for C21orf91-OT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C21orf91-OT1 Gene

  • C21orf91 Overlapping Transcript 1 2 3 5
  • C21orf91 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 285 2
  • NCRNA00285 3
  • D21S2089E 3

External Ids for C21orf91-OT1 Gene

Previous HGNC Symbols for C21orf91-OT1 Gene

  • NCRNA00285

Previous GeneCards Identifiers for C21orf91-OT1 Gene

  • GC21U900433
  • GC21M019137

Summaries for C21orf91-OT1 Gene

GeneCards Summary for C21orf91-OT1 Gene

C21orf91-OT1 (C21orf91 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C21orf91-OT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C21orf91-OT1 Gene

Genomics for C21orf91-OT1 Gene

GeneHancer (GH) Regulatory Elements for C21orf91-OT1 Gene

Promoters and enhancers for C21orf91-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I017791 Enhancer 0.2 dbSUPER 569.6 +0.5 459 1 C21orf91-OT1 ENSG00000244676 LOC105372741 C21orf91
GH21I017779 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 19.1 +8.8 8766 8.7 HDGF FOXA2 BMI1 BATF KLF5 IRF4 ZNF143 ATF7 ETV6 FOS C21orf91-OT1 C21orf91 BTG3 LOC105372741
GH21I017817 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 9.2 -26.8 -26784 4.2 CLOCK FOXA2 ARNT SIN3A DMAP1 IRF4 YY1 POLR2B ZNF207 ZNF143 CHODL C21orf91 C21orf91-OT1 ENSG00000244676
GH21I017793 Enhancer 1.2 Ensembl ENCODE dbSUPER 15 -2.4 -2379 3.7 SOX13 FOXA2 JUN MAX CEBPG BATF RAD21 YY1 LCORL HNF4G ENSG00000244676 C21orf91-OT1 C21orf91
GH21I017788 Enhancer 0.9 ENCODE dbSUPER 19.2 +2.7 2693 2.5 CBFB ZBED1 TRIM22 DPF2 ATF2 RELA ZNF217 BCL11A IKZF1 NBN C21orf91-OT1 CHODL LOC105372741 C21orf91
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C21orf91-OT1 Gene

Genomic Locations for C21orf91-OT1 Gene
chr21:17,763,315-17,792,523
(GRCh38/hg38)
Size:
29,209 bases
Orientation:
Minus strand
chr21:19,135,632-19,164,840
(GRCh37/hg19)

Genomic View for C21orf91-OT1 Gene

Genes around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C21orf91-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C21orf91-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C21orf91-OT1 Gene

Proteins for C21orf91-OT1 Gene

Post-translational modifications for C21orf91-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C21orf91-OT1 Gene

Domains & Families for C21orf91-OT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C21orf91-OT1 Gene

Function for C21orf91-OT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C21orf91-OT1 Gene

Localization for C21orf91-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C21orf91-OT1 Gene

Pathways & Interactions for C21orf91-OT1 Gene

SuperPathways for C21orf91-OT1 Gene

No Data Available

Interacting Proteins for C21orf91-OT1 Gene

Gene Ontology (GO) - Biological Process for C21orf91-OT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C21orf91-OT1 Gene

Drugs & Compounds for C21orf91-OT1 Gene

No Compound Related Data Available

Transcripts for C21orf91-OT1 Gene

mRNA/cDNA for C21orf91-OT1 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C21orf91-OT1 Gene

C21orf91 overlapping transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C21orf91-OT1 Gene

No ASD Table

Relevant External Links for C21orf91-OT1 Gene

GeneLoc Exon Structure for
C21orf91-OT1
ECgene alternative splicing isoforms for
C21orf91-OT1

Expression for C21orf91-OT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C21orf91-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for C21orf91-OT1 Gene

This gene is overexpressed in Testis (x10.0) and Brain - Spinal cord (cervical c-1) (x4.1).

SOURCE GeneReport for Unigene cluster for C21orf91-OT1 Gene:

Hs.473425
genes like me logo Genes that share expression patterns with C21orf91-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C21orf91-OT1 Gene

Orthologs for C21orf91-OT1 Gene

Evolution for C21orf91-OT1 Gene

ENSEMBL:
Gene Tree for C21orf91-OT1 (if available)
TreeFam:
Gene Tree for C21orf91-OT1 (if available)

No data available for Orthologs for C21orf91-OT1 Gene

Paralogs for C21orf91-OT1 Gene

No data available for Paralogs for C21orf91-OT1 Gene

Variants for C21orf91-OT1 Gene

Sequence variations from dbSNP and Humsavar for C21orf91-OT1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000348211 -- 17,792,743(-) T/C upstream_transcript_variant
rs1000974874 -- 17,780,469(-) T/C intron_variant
rs1000978063 -- 17,778,996(-) T/C intron_variant
rs1000987064 -- 17,784,875(-) A/G intron_variant
rs1001128443 -- 17,787,103(-) C/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C21orf91-OT1 Gene

Variant ID Type Subtype PubMed ID
nsv1059861 CNV loss 25217958
nsv834055 CNV gain 17160897
nsv953347 CNV duplication 24416366

Additional Variant Information for C21orf91-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C21orf91-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C21orf91-OT1 Gene

Disorders for C21orf91-OT1 Gene

Additional Disease Information for C21orf91-OT1

No disorders were found for C21orf91-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C21orf91-OT1 Gene

Publications for C21orf91-OT1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 58

Products for C21orf91-OT1 Gene

Sources for C21orf91-OT1 Gene

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