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Aliases for C21orf58 Gene

Aliases for C21orf58 Gene

  • Chromosome 21 Open Reading Frame 58 2 3 5

External Ids for C21orf58 Gene

Previous GeneCards Identifiers for C21orf58 Gene

  • GC21M044226
  • GC21M046576
  • GC21M046577
  • GC21M046545
  • GC21M047720
  • GC21M033104

Summaries for C21orf58 Gene

GeneCards Summary for C21orf58 Gene

C21orf58 (Chromosome 21 Open Reading Frame 58) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C21orf58 Gene

Genomics for C21orf58 Gene

Regulatory Elements for C21orf58 Gene

Enhancers for C21orf58 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C21orf58 on UCSC Golden Path with GeneCards custom track

Promoters for C21orf58 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C21orf58 on UCSC Golden Path with GeneCards custom track

Genomic Location for C21orf58 Gene

Chromosome:
21
Start:
46,300,181 bp from pter
End:
46,323,899 bp from pter
Size:
23,719 bases
Orientation:
Minus strand

Genomic View for C21orf58 Gene

Genes around C21orf58 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C21orf58 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C21orf58 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C21orf58 Gene

Proteins for C21orf58 Gene

  • Protein details for C21orf58 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P58505-CU058_HUMAN
    Recommended name:
    Uncharacterized protein C21orf58
    Protein Accession:
    P58505
    Secondary Accessions:
    • B3KPI1
    • Q8N7N9

    Protein attributes for C21orf58 Gene

    Size:
    322 amino acids
    Molecular mass:
    35003 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK72408.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAK72409.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for C21orf58 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C21orf58 Gene

Proteomics data for C21orf58 Gene at MOPED

Post-translational modifications for C21orf58 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C21orf58 Gene

Domains & Families for C21orf58 Gene

Protein Domains for C21orf58 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C21orf58 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C21orf58: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C21orf58 Gene

Function for C21orf58 Gene

Phenotypes for C21orf58 Gene

GenomeRNAi human phenotypes for C21orf58:
genes like me logo Genes that share phenotypes with C21orf58: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C21orf58 Gene

Localization for C21orf58 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C21orf58 Gene COMPARTMENTS Subcellular localization image for C21orf58 gene
Compartment Confidence
nucleus 4
mitochondrion 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C21orf58 Gene

Pathways & Interactions for C21orf58 Gene

SuperPathways for C21orf58 Gene

No Data Available

Interacting Proteins for C21orf58 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000291691%0d%0a9606.ENSP00000392057%0d%0a9606.ENSP00000339007%0d%0a9606.ENSP00000318914%0d%0a
Selected Interacting proteins: ENSP00000291691 P58505-CU058_HUMAN for C21orf58 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C21orf58 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C21orf58 Gene

Drugs & Compounds for C21orf58 Gene

No Compound Related Data Available

Transcripts for C21orf58 Gene

Unigene Clusters for C21orf58 Gene

Chromosome 21 open reading frame 58:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C21orf58 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13
SP1: - - - - - - - - -
SP2: - -
SP3: - - - - -
SP4: - - - -
SP5: - - - - -
SP6: - - -
SP7: - - - -
SP8: - -
SP9:
SP10: - - -
SP11:

Relevant External Links for C21orf58 Gene

GeneLoc Exon Structure for
C21orf58
ECgene alternative splicing isoforms for
C21orf58

Expression for C21orf58 Gene

mRNA expression in normal human tissues for C21orf58 Gene

mRNA differential expression in normal tissues according to GTEx for C21orf58 Gene

This gene is overexpressed in Pituitary (x7.6).

Protein differential expression in normal tissues from HIPED for C21orf58 Gene

This gene is overexpressed in Lung (38.1) and Colon muscle (30.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C21orf58 Gene



SOURCE GeneReport for Unigene cluster for C21orf58 Gene Hs.236572

mRNA Expression by UniProt/SwissProt for C21orf58 Gene

P58505-CU058_HUMAN
Tissue specificity: Expressed in skin and fetal lung.
genes like me logo Genes that share expression patterns with C21orf58: view

Protein tissue co-expression partners for C21orf58 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for C21orf58 Gene

Orthologs for C21orf58 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C21orf58 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C1H21orf58 35
  • 71.48 (n)
  • 58.59 (a)
C21orf58 36
  • 46 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C31H21orf58 35
  • 66.32 (n)
  • 51.58 (a)
C21orf58 36
  • 51 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C21H21orf58 35
  • 99.38 (n)
  • 98.76 (a)
C21orf58 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2610028H24Rik 36
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C21orf58 36
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves C21orf58 36
  • 35 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C21orf58 36
  • 37 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C6H21orf58 36
  • 39 (a)
OneToOne
Species with no ortholog for C21orf58:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C21orf58 Gene

ENSEMBL:
Gene Tree for C21orf58 (if available)
TreeFam:
Gene Tree for C21orf58 (if available)

Paralogs for C21orf58 Gene

No data available for Paralogs for C21orf58 Gene

Variants for C21orf58 Gene

Sequence variations from dbSNP and Humsavar for C21orf58 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs4819236 -- 46,319,232(+) CACCT(C/T)ACTCC intron-variant, upstream-variant-2KB
rs4819237 -- 46,320,508(+) actcc(A/C)cctca intron-variant, upstream-variant-2KB
rs2015083 -- 46,321,178(+) TATAt(A/T)ttttt intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs2839210 -- 46,315,821(+) TGAAA(A/T)GACGC intron-variant
rs2839211 -- 46,320,096(+) aagga(C/G)tccat intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C21orf58 Gene

Variant ID Type Subtype PubMed ID
nsv470910 CNV Gain 18288195
nsv519904 CNV Loss 19592680
nsv527355 CNV Gain 19592680
nsv914135 CNV Loss 21882294
dgv4817n71 CNV Loss 21882294
nsv3547 CNV Insertion 18451855
nsv914139 CNV Gain 21882294
nsv914141 CNV Loss 21882294

Variation tolerance for C21orf58 Gene

Residual Variation Intolerance Score: 63.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.77; 94.72% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C21orf58 Gene

Disorders for C21orf58 Gene

Relevant External Links for C21orf58

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C21orf58

No disorders were found for C21orf58 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C21orf58 Gene

Publications for C21orf58 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Protein interaction data set highlighted with human Ras-MAPK/PI3K signaling pathways. (PMID: 18624398) Wang J. … He F. (J. Proteome Res. 2008) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C21orf58 Gene

Sources for C21orf58 Gene

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