C20orf96 Gene
protein-coding GIFtS: 39
GCID: GC20M000246
|
|
chromosome 20 open reading frame 96
| |
Aliases
for C20orf96 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Chromosome 20 Open Reading Frame 961 2 | | DJ1103G7.21 | | Uncharacterized Protein C20orf962 |
Export aliases for C20orf96 gene to outside databasesPrevious GC identifers: GC20U990108 GC20M000199 |
Summaries
for C20orf96 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C20orf96 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011387.8
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C20orf96 gene promoter:
AML1a GATA-3 C/EBPalpha GATA-1 GATA-2 AREB6 Max CHOP-10 ATF6 c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for C20orf96
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C20orf96 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20p13 Ensembl cytogenetic band: 20p13 HGNC cytogenetic band: 20p13C20orf96 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M000246: view genomic region
(about GC identifiers)
Start:
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251,504 bp from pter |
End:
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271,390 bp from pter |
Size:
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19,887 bases |
Orientation:
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minus strand |
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Proteins
for C20orf96 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CT096_HUMAN, Q9NUD7 (See
protein sequence)Recommended Name: Uncharacterized protein C20orf96 Size: 363 amino acids; 42859 Da
Sequence caution: Sequence=BAC03772.1; Type=Frameshift; Positions=304;
Secondary accessions: A3KPE0 B2RPH9 Q8N840 Q8NAX5Explore the universe of human proteins at neXtProt for C20orf96: NX_Q9NUD7
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9NUD7
C20orf96 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_542138.1 NP_695001.2
ENSEMBL proteins: ENSP00000371806 ENSP00000353470 ENSP00000383128
Human Recombinant Protein Products:
C20orf96 Antibody Products:
Assay Products for C20orf96: |
Protein
Domains /
Families
for C20orf96 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q9NUD7 |
Function
for C20orf96 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: C20orf96 (NM_153269) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C20orf96 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C20orf96 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C20orf96 |
|
Pathways & Interactions
for C20orf96 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C20orf96
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for C20orf96 (ENSP000003534704) via UniProtKB, MINT, STRING, and/or I2DAbout this table
|
Drugs & Compounds
for C20orf96 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C20orf96
Search CenterWatch for drugs/clinical trials and news about C20orf96 / CT096
|
Transcripts
for C20orf96 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C20orf96 gene (2 alternative transcripts): NM_080571.1 NM_153269.2 Unigene Cluster for C20orf96: Chromosome 20 open reading frame 96 Hs.348112 [show with all ESTs]Unigene Representative Sequence: NM_0805713 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000382369(uc010zpj.1) ENST00000360321(uc021vzl.1 uc002wde.2 uc010zpi.2)
ENST00000400269(uc010zpk.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: C20orf96 (NM_153269) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C20orf96 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C20orf96 |
Additional cDNA sequence: AK097394.1 AK302223.1 AK304526.1 BC134417.1 BC137450.1 BC144649.1 11 DOTS entries: DT.101978218 DT.95274744 DT.100777928 DT.307089 DT.307090 DT.97812242 DT.95262079 DT.97765173 DT.91797622 DT.91997301 DT.95237009 24/108 AceView cDNA sequences (see all 108): BF352831 CR621146 BM696584 BC051762 AI953644 AA771721 BF927848 BX104512 CA431350 AI474578 BU517215 AI474251 AA426503 AL542177 CR597939 CR614965 AK126082 BX332293 AX747257 BG390647 AA771738 BI771368 BQ072883 BM755552
GeneLoc Exon Structure
5/10 Alternative Splicing Database (ASD) splice patterns (SP) for C20orf96 (see all 10) About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | - | | - | | | | - | | - | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | - | | - | | | | - | | - | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | - | | - | | - | | - | | - | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | - | | - | | - | | | | | | - | | - | | | | - | | - | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | - | | - | | - | | | | - | | - | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for C20orf96
|
Expression
for C20orf96 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C20orf96 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGCCGCCCTC
About this image
See C20orf96 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C20orf96
SOURCE GeneReport for Unigene cluster: Hs.348112
SABiosciences Custom PCR Arrays for C20orf96
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C20orf96
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat C20orf96 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C20orf96 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C20orf96 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C20orf96 |
Orthologs
for C20orf96 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for C20orf96 gene from 3/11 species (see all 11) About this table
ENSEMBL Gene Tree for C20orf96 (if available)
TreeFam Gene Tree for C20orf96 (if available) |
Paralogs
for C20orf96 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for C20orf96 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 20 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for C20orf96 (251504 - 271390 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 11 variations for C20orf96
9 CNVs: 2249 79092 79093 90423 79091 90424 90425 79090 90426
2 Indels: 11180 11179 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C20orf96 |
|
Disorders
/ Diseases
for C20orf96 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for C20orf96 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C20orf96 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C20orf96) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for C20orf96 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C20orf96 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C20orf96 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C20orf96 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for C20orf96 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for C20orf96 gene:
Search GeneIP for patents involving C20orf96
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C20orf96 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for C20orf96 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for C20orf96 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C20orf96 | | | OriGene Protein Over-expression Lysate for C20orf96 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for C20orf96 | | OriGene 3'-UTR Clone for C20orf96 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C20orf96 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for C20orf96 | | OriGene Custom Protein Services for C20orf96 | | | OriGene Custom Immunoassay Development | | |
| |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C20orf96 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C20orf96 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C20orf96 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat C20orf96 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C20orf96 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C20orf96 |
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 | | | C20orf96 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C20orf96 |
|  |  |  | | | | Search ThermoFisher Antibodies for C20orf96 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C20orf96 |
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