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Aliases for C20orf96 Gene

Aliases for C20orf96 Gene

  • Chromosome 20 Open Reading Frame 96 2 3
  • Uncharacterized Protein C20orf96 3
  • DJ1103G7.2 3

External Ids for C20orf96 Gene

Previous GeneCards Identifiers for C20orf96 Gene

  • GC20U990108
  • GC20M000199

Summaries for C20orf96 Gene

GeneCards Summary for C20orf96 Gene

C20orf96 (Chromosome 20 Open Reading Frame 96) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf96 Gene

Genomics for C20orf96 Gene

Regulatory Elements for C20orf96 Gene

Genomic Location for C20orf96 Gene

Start:
270,863 bp from pter
End:
290,778 bp from pter
Size:
19,916 bases
Orientation:
Minus strand

Genomic View for C20orf96 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf96 Gene

Proteins for C20orf96 Gene

  • Protein details for C20orf96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NUD7-CT096_HUMAN
    Recommended name:
    Uncharacterized protein C20orf96
    Protein Accession:
    Q9NUD7
    Secondary Accessions:
    • A3KPE0
    • B2RPH9
    • Q8N840
    • Q8NAX5

    Protein attributes for C20orf96 Gene

    Size:
    363 amino acids
    Molecular mass:
    42859 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03772.1; Type=Frameshift; Positions=304; Evidence={ECO:0000305};

neXtProt entry for C20orf96 Gene

Proteomics data for C20orf96 Gene at MOPED

Post-translational modifications for C20orf96 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf96 Gene

No data available for DME Specific Peptides for C20orf96 Gene

Domains for C20orf96 Gene

Protein Domains for C20orf96 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C20orf96 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf96: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf96 Gene

Function for C20orf96 Gene

miRNA for C20orf96 Gene

miRTarBase miRNAs that target C20orf96

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf96 Gene

Localization for C20orf96 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf96 Gene COMPARTMENTS Subcellular localization image for C20orf96 gene
Compartment Confidence
nucleus 3
cytosol 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf96 Gene

Pathways for C20orf96 Gene

SuperPathways for C20orf96 Gene

No Data Available

Interacting Proteins for C20orf96 Gene

Gene Ontology (GO) - Biological Process for C20orf96 Gene

None

No data available for Pathways by source for C20orf96 Gene

Transcripts for C20orf96 Gene

Unigene Clusters for C20orf96 Gene

Chromosome 20 open reading frame 96:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf96 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11
SP1: - - - -
SP2: - - - -
SP3: - - - - -
SP4: - - - - - - -
SP5: - - - - -
SP6: - -
SP7: - - - - - - - - -
SP8:
SP9: - - -
SP10: - -

Relevant External Links for C20orf96 Gene

GeneLoc Exon Structure for
C20orf96
ECgene alternative splicing isoforms for
C20orf96

Expression for C20orf96 Gene

mRNA expression in normal human tissues for C20orf96 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C20orf96 Gene

SOURCE GeneReport for Unigene cluster for C20orf96 Gene Hs.348112

genes like me logo Genes that share expressions with C20orf96: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C20orf96 Gene

Orthologs for C20orf96 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf96 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf96 35
  • 98.31 (n)
  • 96.07 (a)
C20ORF96 36
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf96 35
  • 75.9 (n)
  • 59.28 (a)
C20orf96 36
  • 59 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20orf96 36
  • 65 (a)
OneToOne
C24H20orf96 35
  • 80.33 (n)
  • 65.93 (a)
mouse
(Mus musculus)
Mammalia 6820408C15Rik 35
  • 67.72 (n)
  • 52.16 (a)
6820408C15Rik 16
6820408C15Rik 36
  • 49 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf96 36
  • 46 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC502684 35
  • 71.34 (n)
  • 54.86 (a)
chicken
(Gallus gallus)
Aves C20ORF96 35
  • 47.37 (n)
  • 31.82 (a)
C20orf96 36
  • 26 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C20orf96 36
  • 30 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C11H20orf96 36
  • 24 (a)
OneToOne
si:dkey-76p14.2 35
  • 44.23 (n)
  • 29.18 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
OneToOne
Species with no ortholog for C20orf96:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C20orf96 Gene

ENSEMBL:
Gene Tree for C20orf96 (if available)
TreeFam:
Gene Tree for C20orf96 (if available)

Paralogs for C20orf96 Gene

Selected SIMAP similar genes for C20orf96 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with C20orf96: view

No data available for Paralogs for C20orf96 Gene

Variants for C20orf96 Gene

Sequence variations from dbSNP and Humsavar for C20orf96 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs399511 -- 271,471(-) tgtgt(A/G)tgtgt intron-variant
rs420769 -- 271,451(-) tgtgt(C/G)tgtgt intron-variant
rs513522 -- 271,524(-) ACATT(C/T)GTCCT intron-variant
rs926614 -- 285,600(+) TTTAA(G/T)ACACT intron-variant
rs926617 -- 289,049(+) TTCTA(C/T)GATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf96 Gene

Variant ID Type Subtype PubMed ID
dgv65n68 CNV Loss 17160897
nsv469544 CNV Loss 16826518
nsv3248 CNV Insertion 18451855
esv33186 CNV Loss 17666407
esv32859 CNV Gain 17666407

Relevant External Links for C20orf96 Gene

HapMap Linkage Disequilibrium report
C20orf96

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf96 Gene

Disorders for C20orf96 Gene

No disorders were found for C20orf96 Gene.

No data available for UniProtKB/Swiss-Prot for C20orf96 Gene

Publications for C20orf96 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C20orf96 Gene

Sources for C20orf96 Gene

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