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Aliases for C20orf85 Gene

Aliases for C20orf85 Gene

  • Chromosome 20 Open Reading Frame 85 2 3
  • Low In Lung Cancer 1 2 3
  • Uncharacterized Protein C20orf85 3
  • BA196N14.1 3
  • LLC1 3

External Ids for C20orf85 Gene

Previous GeneCards Identifiers for C20orf85 Gene

  • GC20P056454
  • GC20P057364
  • GC20P057411
  • GC20P056159
  • GC20P056726
  • GC20P053508

Summaries for C20orf85 Gene

GeneCards Summary for C20orf85 Gene

C20orf85 (Chromosome 20 Open Reading Frame 85) is a Protein Coding gene. Diseases associated with C20orf85 include lung cancer.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf85 Gene

Genomics for C20orf85 Gene

Regulatory Elements for C20orf85 Gene

Genomic Location for C20orf85 Gene

Start:
58,150,904 bp from pter
End:
58,161,150 bp from pter
Size:
10,247 bases
Orientation:
Plus strand

Genomic View for C20orf85 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf85 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf85 Gene

Proteins for C20orf85 Gene

  • Protein details for C20orf85 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1P6-CT085_HUMAN
    Recommended name:
    Uncharacterized protein C20orf85
    Protein Accession:
    Q9H1P6
    Secondary Accessions:

    Protein attributes for C20orf85 Gene

    Size:
    137 amino acids
    Molecular mass:
    15719 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf85 Gene

Proteomics data for C20orf85 Gene at MOPED

Post-translational modifications for C20orf85 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf85 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf85 Gene

Domains for C20orf85 Gene

Protein Domains for C20orf85 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf85: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf85 Gene

Function for C20orf85 Gene

miRNA for C20orf85 Gene

miRTarBase miRNAs that target C20orf85

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf85 Gene

Localization for C20orf85 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf85 Gene COMPARTMENTS Subcellular localization image for C20orf85 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf85 Gene

Pathways for C20orf85 Gene

SuperPathways for C20orf85 Gene

No Data Available

Interacting Proteins for C20orf85 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000360210%0d%0a9606.ENSP00000337396%0d%0a
Selected Interacting proteins: ENSP00000360210 for C20orf85 Gene via STRING

Symbol External ID(s) Details
CCNB1IP1

Gene Ontology (GO) - Biological Process for C20orf85 Gene

None

No data available for Pathways by source for C20orf85 Gene

Transcripts for C20orf85 Gene

mRNA/cDNA for C20orf85 Gene

(42) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf85 Gene

Chromosome 20 open reading frame 85:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf85 Gene

No ASD Table

Relevant External Links for C20orf85 Gene

GeneLoc Exon Structure for
C20orf85
ECgene alternative splicing isoforms for
C20orf85

Expression for C20orf85 Gene

mRNA expression in normal human tissues for C20orf85 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf85 Gene

This gene is overexpressed in Testis (23.2), Fallopian Tube (12.6), Cervix - Endocervix (9.4), and Lung (5.8).

SOURCE GeneReport for Unigene cluster for C20orf85 Gene Hs.43977

genes like me logo Genes that share expressions with C20orf85: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C20orf85 Gene

Orthologs for C20orf85 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf85 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf85 35
  • 99.03 (n)
  • 98.54 (a)
C20orf85 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf85 35
  • 85.48 (n)
  • 86.29 (a)
C13H20ORF85 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20orf85 36
  • 83 (a)
OneToOne
C24H20orf85 35
  • 83.94 (n)
  • 83.21 (a)
mouse
(Mus musculus)
Mammalia 1700021F07Rik 35
  • 75.74 (n)
  • 71.32 (a)
1700021F07Rik 16
1700021F07Rik 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf85 36
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C20orf85 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC689618 35
  • 75.8 (n)
  • 72.59 (a)
chicken
(Gallus gallus)
Aves C20H20ORF85 35
  • 60.61 (n)
  • 57.85 (a)
C20orf85 36
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C20orf85 36
  • 60 (a)
OneToOne
Species with no ortholog for C20orf85:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf85 Gene

ENSEMBL:
Gene Tree for C20orf85 (if available)
TreeFam:
Gene Tree for C20orf85 (if available)

Paralogs for C20orf85 Gene

No data available for Paralogs for C20orf85 Gene

Variants for C20orf85 Gene

Sequence variations from dbSNP and Humsavar for C20orf85 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs884341 -- 58,161,618(+) GCCTC(A/G)TGAAC downstream-variant-500B
rs1412980 -- 58,150,004(+) TCCTA(C/G)ATCGT upstream-variant-2KB
rs1541118 -- 58,152,349(+) CTACC(G/T)AACAC intron-variant
rs4239678 -- 58,161,562(+) GGGCT(A/G)GGGGC downstream-variant-500B
rs4810120 -- 58,157,745(+) AGTCC(A/G)TAATT intron-variant

Relevant External Links for C20orf85 Gene

HapMap Linkage Disequilibrium report
C20orf85

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C20orf85 Gene

Disorders for C20orf85 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for C20orf85 Gene including...

Search for C20orf85 Gene in MalaCards »

(1) University of Copenhagen DISEASES for C20orf85 Gene

genes like me logo Genes that share disorders with C20orf85: view

No data available for UniProtKB/Swiss-Prot for C20orf85 Gene

Publications for C20orf85 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Inactivation of LLC1 gene in nonsmall cell lung cancer. (PMID: 17304513) Hong K.M. … Jen J. (Int. J. Cancer 2007) 3
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C20orf85 Gene

Sources for C20orf85 Gene

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