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Aliases for C20orf78 Gene

Aliases for C20orf78 Gene

  • Chromosome 20 Open Reading Frame 78 2 3 5
  • Putative Uncharacterized Protein C20orf78 3
  • DJ1068E13.1 3

External Ids for C20orf78 Gene

Previous GeneCards Identifiers for C20orf78 Gene

  • GC20M018778
  • GC20M018738
  • GC20M018785
  • GC20U900203

Summaries for C20orf78 Gene

GeneCards Summary for C20orf78 Gene

C20orf78 (Chromosome 20 Open Reading Frame 78) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf78 Gene

Genomics for C20orf78 Gene

Regulatory Elements for C20orf78 Gene

Enhancers for C20orf78 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F018832 0.6 Ensembl 0.8 -2.0 -1998 0.4 JUND PBX2 FOS KDM1A MYC C20orf78 PIR45305
GH20F018839 0.2 ENCODE 0.4 -9.8 -9849 0.2 C20orf78 PIR45305
GH20F018837 0.2 ENCODE 0.4 -7.7 -7709 0.1 C20orf78 PIR45305
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C20orf78 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf78 Gene

Chromosome:
20
Start:
18,809,351 bp from pter
End:
18,830,203 bp from pter
Size:
20,853 bases
Orientation:
Minus strand

Genomic View for C20orf78 Gene

Genes around C20orf78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf78 Gene

Proteins for C20orf78 Gene

  • Protein details for C20orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BR46-CT078_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf78
    Protein Accession:
    Q9BR46

    Protein attributes for C20orf78 Gene

    Size:
    151 amino acids
    Molecular mass:
    17183 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf78 Gene

Post-translational modifications for C20orf78 Gene

No Post-translational modifications

Other Protein References for C20orf78 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C20orf78 Gene

Domains & Families for C20orf78 Gene

Protein Domains for C20orf78 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf78: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf78 Gene

Function for C20orf78 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf78 Gene

Localization for C20orf78 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C20orf78 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf78 Gene

Pathways & Interactions for C20orf78 Gene

SuperPathways for C20orf78 Gene

No Data Available

Interacting Proteins for C20orf78 Gene

Gene Ontology (GO) - Biological Process for C20orf78 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf78 Gene

Transcripts for C20orf78 Gene

mRNA/cDNA for C20orf78 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf78 Gene

Chromosome 20 open reading frame 78:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf78 Gene

No ASD Table

Relevant External Links for C20orf78 Gene

GeneLoc Exon Structure for
C20orf78
ECgene alternative splicing isoforms for
C20orf78

Expression for C20orf78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C20orf78 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf78 Gene

This gene is overexpressed in Testis (x52.2).

NURSA nuclear receptor signaling pathways regulating expression of C20orf78 Gene:

C20orf78

SOURCE GeneReport for Unigene cluster for C20orf78 Gene:

Hs.664484
genes like me logo Genes that share expression patterns with C20orf78: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C20orf78 Gene

Orthologs for C20orf78 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf78 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf78 35
  • 99 (a)
OneToOne
C20H20orf78 34
  • 98.9 (n)
Species where no ortholog for C20orf78 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf78 Gene

ENSEMBL:
Gene Tree for C20orf78 (if available)
TreeFam:
Gene Tree for C20orf78 (if available)

Paralogs for C20orf78 Gene

No data available for Paralogs for C20orf78 Gene

Variants for C20orf78 Gene

Sequence variations from dbSNP and Humsavar for C20orf78 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1053834 -- 18,814,070(+) TGGAC(C/T)ATTGA intron-variant, reference, synonymous-codon
rs1053839 -- 18,814,110(+) CGGGA(C/T)CTGCC intron-variant, reference, missense
rs11087266 -- 18,820,270(+) AAATA(-/T)TTTTT intron-variant
rs11087267 -- 18,830,435(+) TGGTG(A/G)CGGGC upstream-variant-2KB
rs111263054 -- 18,827,700(+) CTGTA(C/T)GGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf78 Gene

Variant ID Type Subtype PubMed ID
nsv833934 CNV loss 17160897

Variation tolerance for C20orf78 Gene

Gene Damage Index Score: 1.08; 21.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C20orf78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf78 Gene

Disorders for C20orf78 Gene

Relevant External Links for C20orf78

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf78

No disorders were found for C20orf78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf78 Gene

Publications for C20orf78 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 2 3 4 64

Products for C20orf78 Gene

Sources for C20orf78 Gene

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