Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C20orf78 Gene

Aliases for C20orf78 Gene

  • Chromosome 20 Open Reading Frame 78 2 3
  • Putative Uncharacterized Protein C20orf78 3
  • DJ1068E13.1 3

External Ids for C20orf78 Gene

Summaries for C20orf78 Gene

GeneCards Summary for C20orf78 Gene

C20orf78 (Chromosome 20 Open Reading Frame 78) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf78 Gene

Genomics for C20orf78 Gene

Genomic Location for C20orf78 Gene

Start:
18,809,728 bp from pter
End:
18,830,195 bp from pter
Size:
20,468 bases
Orientation:
Minus strand

Genomic View for C20orf78 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf78 Gene

No data available for Regulatory Elements for C20orf78 Gene

Proteins for C20orf78 Gene

  • Protein details for C20orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BR46-CT078_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf78
    Protein Accession:
    Q9BR46
    Secondary Accessions:

    Protein attributes for C20orf78 Gene

    Size:
    151 amino acids
    Molecular mass:
    17183 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf78 Gene

Proteomics data for C20orf78 Gene at MOPED

Post-translational modifications for C20orf78 Gene

No Post-translational modifications

Other Protein References for C20orf78 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf78 Gene

Domains for C20orf78 Gene

Protein Domains for C20orf78 Gene

ProtoNet:
genes like me logo Genes that share domains with C20orf78: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf78 Gene

Function for C20orf78 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C20orf78 Gene

Localization for C20orf78 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf78 Gene COMPARTMENTS Subcellular localization image for C20orf78 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for C20orf78 Gene

Pathways for C20orf78 Gene

SuperPathways for C20orf78 Gene

No Data Available

Interacting Proteins for C20orf78 Gene

Gene Ontology (GO) - Biological Process for C20orf78 Gene

None

No data available for Pathways by source for C20orf78 Gene

Transcripts for C20orf78 Gene

mRNA/cDNA for C20orf78 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf78 Gene

Chromosome 20 open reading frame 78:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf78 Gene

No ASD Table

Relevant External Links for C20orf78 Gene

GeneLoc Exon Structure for
C20orf78
ECgene alternative splicing isoforms for
C20orf78

Expression for C20orf78 Gene

mRNA expression in normal human tissues for C20orf78 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf78 Gene

This gene is overexpressed in Testis (52.2).

SOURCE GeneReport for Unigene cluster for C20orf78 Gene Hs.664484

genes like me logo Genes that share expressions with C20orf78: view

Orthologs for C20orf78 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf78 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf78 36
  • 98.9 (n)
  • 98.68 (a)
C20orf78 37
  • 99 (a)
OneToOne
Species with no ortholog for C20orf78:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf78 Gene

ENSEMBL:
Gene Tree for C20orf78 (if available)
TreeFam:
Gene Tree for C20orf78 (if available)

Paralogs for C20orf78 Gene

No data available for Paralogs for C20orf78 Gene

Variants for C20orf78 Gene

Sequence variations from dbSNP and Humsavar for C20orf78 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs761350 -- 18,816,032(-) AAGGC(A/G)ATGCT intron-variant
rs2003710 -- 18,816,659(-) GACTT(C/T)GTCGC intron-variant
rs2012985 -- 18,816,619(-) ATGTG(A/G)CACAA intron-variant
rs2206865 -- 18,821,318(-) tatat(C/T)tagaa intron-variant
rs2328321 -- 18,825,050(+) CCTTA(A/G)ACAGA intron-variant

Relevant External Links for C20orf78 Gene

HapMap Linkage Disequilibrium report
C20orf78

No data available for Structural Variations from Database of Genomic Variants (DGV) for C20orf78 Gene

Disorders for C20orf78 Gene

No disorders were found for C20orf78 Gene.

No data available for UniProtKB/Swiss-Prot for C20orf78 Gene

Publications for C20orf78 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 2 3 4

Products for C20orf78 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf78
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf78
    • Block miRNA regulation of C20orf78 using miScript Target Protectors

    Sources for C20orf78 Gene

    Back to Top

    Content