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Aliases for C20orf27 Gene

Aliases for C20orf27 Gene

  • Chromosome 20 Open Reading Frame 27 2 3
  • Hypothetical Protein LOC54976 2

External Ids for C20orf27 Gene

Summaries for C20orf27 Gene

GeneCards Summary for C20orf27 Gene

C20orf27 (Chromosome 20 Open Reading Frame 27) is a Protein Coding gene.

Gene Wiki entry for C20orf27 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf27 Gene

Genomics for C20orf27 Gene

Genomic Location for C20orf27 Gene

Start:
3,753,499 bp from pter
End:
3,768,388 bp from pter
Size:
14,890 bases
Orientation:
Minus strand

Genomic View for C20orf27 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf27 Gene

Regulatory Elements for C20orf27 Gene

Proteins for C20orf27 Gene

  • Protein details for C20orf27 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZN8-CT027_HUMAN
    Recommended name:
    UPF0687 protein C20orf27
    Protein Accession:
    Q9GZN8
    Secondary Accessions:
    • A8K4J0
    • D3DVX8
    • Q5JX81
    • Q9NWX3

    Protein attributes for C20orf27 Gene

    Size:
    174 amino acids
    Molecular mass:
    19291 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf27 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf27 Gene

Proteomics data for C20orf27 Gene at MOPED

Post-translational modifications for C20orf27 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf27 Gene

No data available for DME Specific Peptides for C20orf27 Gene

Domains for C20orf27 Gene

Protein Domains for C20orf27 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CT027_HUMAN
Family:
  • Belongs to the UPF0687 family.:
    • Q9GZN8
genes like me logo Genes that share domains with C20orf27: view

No data available for Gene Families for C20orf27 Gene

Function for C20orf27 Gene

Gene Ontology (GO) - Molecular Function for C20orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C20orf27: view

Phenotypes for C20orf27 Gene

GenomeRNAi human phenotypes for C20orf27:
genes like me logo Genes that share phenotypes with C20orf27: view

miRNA for C20orf27 Gene

miRTarBase miRNAs that target C20orf27

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf27 Gene

Localization for C20orf27 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf27 Gene COMPARTMENTS Subcellular localization image for C20orf27 gene
Compartment Confidence
mitochondrion 3
extracellular 2
cytosol 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C20orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with C20orf27: view

Pathways for C20orf27 Gene

SuperPathways for C20orf27 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C20orf27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C20orf27: view

No data available for Pathways by source for C20orf27 Gene

Transcripts for C20orf27 Gene

Unigene Clusters for C20orf27 Gene

Chromosome 20 open reading frame 27:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf27 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c
SP1: - - - - -
SP2: - - - -
SP3: - - -
SP4: - -
SP5: - - - - -
SP6: -
SP7: - - -
SP8: - - - - - - -
SP9: - -

Relevant External Links for C20orf27 Gene

GeneLoc Exon Structure for
C20orf27
ECgene alternative splicing isoforms for
C20orf27

Expression for C20orf27 Gene

mRNA expression in normal human tissues for C20orf27 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf27 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (4.8), Brain - Putamen (basal ganglia) (4.3), and Brain - Caudate (basal ganglia) (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C20orf27 Gene

SOURCE GeneReport for Unigene cluster for C20orf27 Gene Hs.274422

genes like me logo Genes that share expressions with C20orf27: view

Orthologs for C20orf27 Gene

This gene was present in the common ancestor of animals.

Orthologs for C20orf27 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf27 36
  • 99.33 (n)
  • 98.99 (a)
C20orf27 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf27 36
  • 87.98 (n)
  • 90.12 (a)
C20orf27 37
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C24H20orf27 36
  • 90.5 (n)
  • 94.77 (a)
mouse
(Mus musculus)
Mammalia 1700037H04Rik 36
  • 86.82 (n)
  • 88.95 (a)
1700037H04Rik 16
1700037H04Rik 37
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C20orf27 37
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1311739 36
  • 87.02 (n)
  • 90.12 (a)
chicken
(Gallus gallus)
Aves C20orf27 37
  • 52 (a)
OneToOne
LOC100858801 36
  • 69.93 (n)
  • 65.73 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c20orf27 36
  • 67.83 (n)
  • 66.28 (a)
Str.268 36
zebrafish
(Danio rerio)
Actinopterygii C20orf27 (1 of 2) 37
  • 56 (a)
OneToMany
C20orf27 (2 of 2) 37
  • 43 (a)
OneToMany
LOC560941 36
  • 62.96 (n)
  • 61.4 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG6983 37
  • 28 (a)
OneToOne
Species with no ortholog for C20orf27:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C20orf27 Gene

ENSEMBL:
Gene Tree for C20orf27 (if available)
TreeFam:
Gene Tree for C20orf27 (if available)

Paralogs for C20orf27 Gene

Pseudogenes.org Pseudogenes for C20orf27 Gene

genes like me logo Genes that share paralogs with C20orf27: view

No data available for Paralogs for C20orf27 Gene

Variants for C20orf27 Gene

Sequence variations from dbSNP and Humsavar for C20orf27 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs9171 -- 3,753,739(-) CAGGG(A/G)CTCCC utr-variant-3-prime, nc-transcript-variant
rs472910 -- 3,764,317(+) GGCTC(A/T)GGTTA intron-variant
rs484597 -- 3,760,227(-) CCATG(A/G)GTGGC intron-variant
rs490152 -- 3,766,216(+) GAACA(C/G)CCATT intron-variant
rs492936 -- 3,765,887(+) TCCCC(C/G)CCAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf27 Gene

Variant ID Type Subtype PubMed ID
nsv912615 CNV Loss 21882294
nsv833899 CNV Loss 17160897
nsv912617 CNV Loss 21882294
nsv828673 CNV Gain 20364138
esv2722120 CNV Deletion 23290073

Relevant External Links for C20orf27 Gene

HapMap Linkage Disequilibrium report
C20orf27

Disorders for C20orf27 Gene

Relevant External Links for C20orf27

Genetic Association Database (GAD)
C20orf27
Human Genome Epidemiology (HuGE) Navigator
C20orf27
genes like me logo Genes that share disorders with C20orf27: view

No data available for UniProtKB/Swiss-Prot for C20orf27 Gene

Publications for C20orf27 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 2 3 4
  2. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PMID: 12665801) Gevaert K. … Vandekerckhove J. (Nat. Biotechnol. 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for C20orf27 Gene

Sources for C20orf27 Gene

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