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Aliases for C20orf24 Gene

Aliases for C20orf24 Gene

  • Chromosome 20 Open Reading Frame 24 2 3
  • Rab5-Interacting Protein 3 4
  • RIP5 3 4
  • Uncharacterized Protein C20orf24 3
  • PNAS-11 3

External Ids for C20orf24 Gene

Summaries for C20orf24 Gene

GeneCards Summary for C20orf24 Gene

C20orf24 (Chromosome 20 Open Reading Frame 24) is a Protein Coding gene. An important paralog of this gene is TGIF2-C20orf24.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf24 Gene

Genomics for C20orf24 Gene

Genomic Location for C20orf24 Gene

Start:
36,605,734 bp from pter
End:
36,612,557 bp from pter
Size:
6,824 bases
Orientation:
Plus strand

Genomic View for C20orf24 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf24 Gene

Regulatory Elements for C20orf24 Gene

Proteins for C20orf24 Gene

  • Protein details for C20orf24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUV8-CT024_HUMAN
    Recommended name:
    Uncharacterized protein C20orf24
    Protein Accession:
    Q9BUV8
    Secondary Accessions:
    • E1P5U0
    • O00605
    • Q5QPG6
    • Q5QPG7
    • Q9BT03
    • Q9BZU7
    • Q9UI05

    Protein attributes for C20orf24 Gene

    Size:
    137 amino acids
    Molecular mass:
    15487 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf24 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf24 Gene

Proteomics data for C20orf24 Gene at MOPED

Post-translational modifications for C20orf24 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys27

Other Protein References for C20orf24 Gene

No data available for DME Specific Peptides for C20orf24 Gene

Domains for C20orf24 Gene

Protein Domains for C20orf24 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C20orf24 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf24: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf24 Gene

Function for C20orf24 Gene

Gene Ontology (GO) - Molecular Function for C20orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C20orf24: view

Phenotypes for C20orf24 Gene

GenomeRNAi human phenotypes for C20orf24:
genes like me logo Genes that share phenotypes with C20orf24: view

miRNA for C20orf24 Gene

miRTarBase miRNAs that target C20orf24

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf24 Gene

Localization for C20orf24 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf24 Gene COMPARTMENTS Subcellular localization image for C20orf24 gene
Compartment Confidence
cytosol 2
plasma membrane 2
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C20orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with C20orf24: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C20orf24 Gene

Pathways for C20orf24 Gene

SuperPathways for C20orf24 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C20orf24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C20orf24: view

No data available for Pathways by source for C20orf24 Gene

Transcripts for C20orf24 Gene

Unigene Clusters for C20orf24 Gene

Chromosome 20 open reading frame 24:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf24 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c · 5d
SP1: - - -
SP2:
SP3: - -
SP4: - - - -
SP5: -

Relevant External Links for C20orf24 Gene

GeneLoc Exon Structure for
C20orf24
ECgene alternative splicing isoforms for
C20orf24

Expression for C20orf24 Gene

mRNA expression in normal human tissues for C20orf24 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C20orf24 Gene

This gene is overexpressed in Whole Blood (6.0) and Esophagus - Mucosa (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C20orf24 Gene

SOURCE GeneReport for Unigene cluster for C20orf24 Gene Hs.584985

genes like me logo Genes that share expressions with C20orf24: view

No data available for mRNA Expression by UniProt/SwissProt for C20orf24 Gene

Orthologs for C20orf24 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C20orf24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TGIF2 35
  • 99.51 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C13H20orf24 35
  • 85.79 (n)
  • 90.7 (a)
dog
(Canis familiaris)
Mammalia C24H20orf24 35
  • 86.82 (n)
  • 92.25 (a)
mouse
(Mus musculus)
Mammalia 1110008F13Rik 35
  • 86.3 (n)
  • 91.47 (a)
1110008F13Rik 16
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 36 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1307752 35
  • 86.3 (n)
  • 91.47 (a)
chicken
(Gallus gallus)
Aves C20H20ORF24 35
  • 73.13 (n)
  • 76.74 (a)
C20H20ORF24 36
  • 47 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 44 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.7273 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c20orf24 35
  • 67.2 (n)
  • 70.63 (a)
Str.6359 35
zebrafish
(Danio rerio)
Actinopterygii c20orf24 35
  • 65.07 (n)
  • 68 (a)
C23H20orf24 36
  • 42 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004838 35
  • 51.73 (n)
  • 41.6 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG12107 35
  • 56.21 (n)
  • 53.92 (a)
CG12107 36
  • 26 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F44E7.9 35
  • 49.83 (n)
  • 40.4 (a)
F44E7.9 36
  • 23 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G29020 35
  • 46.9 (n)
  • 34.51 (a)
rice
(Oryza sativa)
Liliopsida Os05g0110600 35
  • 52.08 (n)
  • 39.29 (a)
Species with no ortholog for C20orf24:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C20orf24 Gene

ENSEMBL:
Gene Tree for C20orf24 (if available)
TreeFam:
Gene Tree for C20orf24 (if available)

Paralogs for C20orf24 Gene

Paralogs for C20orf24 Gene

genes like me logo Genes that share paralogs with C20orf24: view

Variants for C20orf24 Gene

Structural Variations from Database of Genomic Variants (DGV) for C20orf24 Gene

Variant ID Type Subtype PubMed ID
nsv833967 CNV Loss 17160897

Relevant External Links for C20orf24 Gene

HapMap Linkage Disequilibrium report
C20orf24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for C20orf24 Gene

Disorders for C20orf24 Gene

Relevant External Links for C20orf24

Human Genome Epidemiology (HuGE) Navigator
C20orf24
genes like me logo Genes that share disorders with C20orf24: view

No data available for UniProtKB/Swiss-Prot for C20orf24 Gene

Publications for C20orf24 Gene

  1. An unappreciated role for RNA surveillance. (PMID: 14759258) Hillman R.T. … Brenner S.E. (Genome Biol. 2004) 3 4
  2. RIP5 is a RIP-homologous inducer of cell death. (PMID: 15178406) Zha J. … Shu H.B. (Biochem. Biophys. Res. Commun. 2004) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The GDP/GTP cycle of Rab5 in the regulation of endocytotic membrane traffic. (PMID: 8824393) Vitale G. … Zerial M. (Cold Spring Harb. Symp. Quant. Biol. 1995) 3 4
  5. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4

Products for C20orf24 Gene

Sources for C20orf24 Gene

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