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Aliases for C20orf24 Gene

Aliases for C20orf24 Gene

  • Chromosome 20 Open Reading Frame 24 2 3 5
  • Rab5-Interacting Protein 3 4
  • RIP5 3 4
  • PNAS-11 3

External Ids for C20orf24 Gene

Previous GeneCards Identifiers for C20orf24 Gene

  • GC20P034962
  • GC20P035872
  • GC20P035919
  • GC20P034667
  • GC20P035234
  • GC20P031970

Summaries for C20orf24 Gene

GeneCards Summary for C20orf24 Gene

C20orf24 (Chromosome 20 Open Reading Frame 24) is a Protein Coding gene. Diseases associated with C20orf24 include congenital anomalies of kidney and urinary tract. An important paralog of this gene is TGIF2-C20orf24.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf24 Gene

Genomics for C20orf24 Gene

Regulatory Elements for C20orf24 Gene

Promoters for C20orf24 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C20orf24 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf24 Gene

Chromosome:
20
Start:
36,605,734 bp from pter
End:
36,612,557 bp from pter
Size:
6,824 bases
Orientation:
Plus strand

Genomic View for C20orf24 Gene

Genes around C20orf24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf24 Gene

Proteins for C20orf24 Gene

  • Protein details for C20orf24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUV8-CT024_HUMAN
    Recommended name:
    Uncharacterized protein C20orf24
    Protein Accession:
    Q9BUV8
    Secondary Accessions:
    • E1P5U0
    • O00605
    • Q5QPG6
    • Q5QPG7
    • Q9BT03
    • Q9BZU7
    • Q9UI05

    Protein attributes for C20orf24 Gene

    Size:
    137 amino acids
    Molecular mass:
    15487 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf24 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf24 Gene

Proteomics data for C20orf24 Gene at MOPED

Post-translational modifications for C20orf24 Gene

  • Ubiquitination at Lys 27
  • Modification sites at PhosphoSitePlus

Other Protein References for C20orf24 Gene

Antibody Products

No data available for DME Specific Peptides for C20orf24 Gene

Domains & Families for C20orf24 Gene

Protein Domains for C20orf24 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C20orf24 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf24: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf24 Gene

Function for C20orf24 Gene

genes like me logo Genes that share phenotypes with C20orf24: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C20orf24 Gene

Localization for C20orf24 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf24 Gene COMPARTMENTS Subcellular localization image for C20orf24 gene
Compartment Confidence
cytosol 2
plasma membrane 2
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf24 Gene

Pathways & Interactions for C20orf24 Gene

SuperPathways for C20orf24 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C20orf24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf24 Gene

Drugs & Compounds for C20orf24 Gene

No Compound Related Data Available

Transcripts for C20orf24 Gene

Unigene Clusters for C20orf24 Gene

Chromosome 20 open reading frame 24:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf24 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c · 5d
SP1: - - -
SP2:
SP3: - -
SP4: - - - -
SP5: -

Relevant External Links for C20orf24 Gene

GeneLoc Exon Structure for
C20orf24
ECgene alternative splicing isoforms for
C20orf24

Expression for C20orf24 Gene

mRNA expression in normal human tissues for C20orf24 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C20orf24 Gene

This gene is overexpressed in Whole Blood (x6.0) and Esophagus - Mucosa (x4.1).

Protein differential expression in normal tissues from HIPED for C20orf24 Gene

This gene is overexpressed in Breast (36.6) and Bone (17.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for C20orf24 Gene



SOURCE GeneReport for Unigene cluster for C20orf24 Gene Hs.584985

genes like me logo Genes that share expression patterns with C20orf24: view

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C20orf24 Gene

Orthologs for C20orf24 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C20orf24 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C13H20orf24 35
  • 85.79 (n)
  • 90.7 (a)
dog
(Canis familiaris)
Mammalia C24H20orf24 35
  • 86.82 (n)
  • 92.25 (a)
mouse
(Mus musculus)
Mammalia 1110008F13Rik 35
  • 86.3 (n)
  • 91.47 (a)
1110008F13Rik 16
chimpanzee
(Pan troglodytes)
Mammalia TGIF2 35
  • 99.51 (n)
  • 100 (a)
rat
(Rattus norvegicus)
Mammalia RGD1307752 35
  • 86.3 (n)
  • 91.47 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 36 (a)
OneToMany
chicken
(Gallus gallus)
Aves C20H20ORF24 35
  • 73.13 (n)
  • 76.74 (a)
C20H20ORF24 36
  • 47 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 44 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia c20orf24 35
  • 67.2 (n)
  • 70.63 (a)
Str.6359 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.7273 35
zebrafish
(Danio rerio)
Actinopterygii c20orf24 35
  • 65.07 (n)
  • 68 (a)
C23H20orf24 36
  • 42 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004838 35
  • 51.73 (n)
  • 41.6 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG12107 35
  • 56.21 (n)
  • 53.92 (a)
CG12107 36
  • 26 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F44E7.9 35
  • 49.83 (n)
  • 40.4 (a)
F44E7.9 36
  • 23 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G29020 35
  • 46.9 (n)
  • 34.51 (a)
rice
(Oryza sativa)
Liliopsida Os05g0110600 35
  • 52.08 (n)
  • 39.29 (a)
Species with no ortholog for C20orf24:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C20orf24 Gene

ENSEMBL:
Gene Tree for C20orf24 (if available)
TreeFam:
Gene Tree for C20orf24 (if available)

Paralogs for C20orf24 Gene

Paralogs for C20orf24 Gene

genes like me logo Genes that share paralogs with C20orf24: view

Variants for C20orf24 Gene

Structural Variations from Database of Genomic Variants (DGV) for C20orf24 Gene

Variant ID Type Subtype PubMed ID
nsv833967 CNV Loss 17160897

Variation tolerance for C20orf24 Gene

Residual Variation Intolerance Score: 55.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.15; 3.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C20orf24 Gene

HapMap Linkage Disequilibrium report
C20orf24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for C20orf24 Gene

Disorders for C20orf24 Gene

MalaCards: The human disease database

(1) MalaCards diseases for C20orf24 Gene - From: OMIM

Disorder Aliases PubMed IDs
congenital anomalies of kidney and urinary tract
  • renal hypodysplasia, nonsyndromic, 1
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for C20orf24

Human Genome Epidemiology (HuGE) Navigator
C20orf24
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf24
genes like me logo Genes that share disorders with C20orf24: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C20orf24 Gene

Publications for C20orf24 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. RIP5 is a RIP-homologous inducer of cell death. (PMID: 15178406) Zha J. … Shu H.B. (Biochem. Biophys. Res. Commun. 2004) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Global landscape of HIV-human protein complexes. (PMID: 22190034) JAoger S. … Krogan N.J. (Nature 2012) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for C20orf24 Gene

Sources for C20orf24 Gene

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