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Aliases for C20orf204 Gene

Subcategory (RNA class) for C20orf204 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C20orf204 Gene

  • Chromosome 20 Open Reading Frame 204 2 3 5
  • Long Intergenic Non-Protein Coding RNA 176 2 3
  • Putative Proline-Rich Protein 17 3 4
  • Proline Rich 17 2 3
  • NCRNA00176 3 4
  • LINC00176 3 4
  • PRR17 3 4
  • Putative Uncharacterized Protein C20orf204 3
  • Non-Protein Coding RNA 176 2

External Ids for C20orf204 Gene

Previous HGNC Symbols for C20orf204 Gene

  • PRR17
  • NCRNA00176
  • LINC00176

Previous GeneCards Identifiers for C20orf204 Gene

  • GC20P064066

Summaries for C20orf204 Gene

GeneCards Summary for C20orf204 Gene

C20orf204 (Chromosome 20 Open Reading Frame 204) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C20orf204 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf204 Gene

Genomics for C20orf204 Gene

Regulatory Elements for C20orf204 Gene

Enhancers for C20orf204 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H063977 1.7 FANTOM5 ENCODE dbSUPER 23.3 -54.5 -54540 4 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC PPARGC1A PRPF6 C20orf204 GMEB2 CICP4 RTEL1 SAMD10 ZNF512B
GH20H063971 1.6 Ensembl ENCODE dbSUPER 20.3 -60.7 -60742 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 MIR647 UCKL1 PRPF6 C20orf204 GMEB2 ENSG00000237371 CICP4 RTEL1 SAMD10 ZNF512B
GH20H064038 1.4 ENCODE dbSUPER 18.1 +6.1 6095 4 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 ZNF207 DEK PAF1 PRPF6 C20orf204 RTEL1 ARFRP1 ENSG00000237371 TNFRSF6B YTHDF1 GMEB2 CICP4 UCKL1
GH20H063845 1.6 Ensembl ENCODE dbSUPER 10.6 -187.0 -187018 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 FEZF1 DMAP1 ZBTB7B DIDO1 MIR647 UCKL1 PCMTD2 TNFRSF6B RTEL1 ZNF512B PRPF6 ENSG00000237371 CICP4
GH20H064009 0.7 ENCODE 23.8 -23.5 -23538 2 SMARCA5 PKNOX1 ZNF687 MNT EBF1 DPF2 BATF ZNF592 SREBF1 POLR2A C20orf204 PRPF6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C20orf204 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf204 Gene

Chromosome:
20
Start:
64,034,344 bp from pter
End:
64,039,962 bp from pter
Size:
5,619 bases
Orientation:
Plus strand

Genomic View for C20orf204 Gene

Genes around C20orf204 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf204 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf204 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf204 Gene

Proteins for C20orf204 Gene

  • Protein details for C20orf204 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZNR8-CT204_HUMAN
    Recommended name:
    Putative uncharacterized protein C20orf204
    Protein Accession:
    Q6ZNR8

    Protein attributes for C20orf204 Gene

    Size:
    217 amino acids
    Molecular mass:
    22251 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf204 Gene

Post-translational modifications for C20orf204 Gene

No Post-translational modifications

Other Protein References for C20orf204 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf204 Gene

Domains & Families for C20orf204 Gene

Protein Domains for C20orf204 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C20orf204 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf204: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf204 Gene

Function for C20orf204 Gene

Phenotypes From GWAS Catalog for C20orf204 Gene

Phenotypes for C20orf204 Gene

genes like me logo Genes that share phenotypes with C20orf204: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C20orf204
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf204 Gene

Localization for C20orf204 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C20orf204 Gene

Pathways & Interactions for C20orf204 Gene

SuperPathways for C20orf204 Gene

No Data Available

Interacting Proteins for C20orf204 Gene

Gene Ontology (GO) - Biological Process for C20orf204 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf204 Gene

Drugs & Compounds for C20orf204 Gene

No Compound Related Data Available

Transcripts for C20orf204 Gene

mRNA/cDNA for C20orf204 Gene

(2) REFSEQ mRNAs :
(12) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C20orf204
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf204 Gene

No ASD Table

Relevant External Links for C20orf204 Gene

GeneLoc Exon Structure for
C20orf204
ECgene alternative splicing isoforms for
C20orf204

Expression for C20orf204 Gene

NURSA nuclear receptor signaling pathways regulating expression of C20orf204 Gene:

C20orf204
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C20orf204 Gene

Orthologs for C20orf204 Gene

Evolution for C20orf204 Gene

ENSEMBL:
Gene Tree for C20orf204 (if available)
TreeFam:
Gene Tree for C20orf204 (if available)

No data available for Orthologs for C20orf204 Gene

Paralogs for C20orf204 Gene

No data available for Paralogs for C20orf204 Gene

Variants for C20orf204 Gene

Sequence variations from dbSNP and Humsavar for C20orf204 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs114637353 Likely benign 64,033,000(+) TGAGC(A/G/T)GTTGC upstream-variant-2KB, utr-variant-3-prime
rs7550 Likely benign 64,033,012(-) AGACC(A/G)GCCAT upstream-variant-2KB, utr-variant-3-prime
rs139778757 Uncertain significance 64,032,910(+) GCGCC(A/G)TGTCC upstream-variant-2KB, reference, missense
rs140112205 Uncertain significance 64,032,855(+) GAGGA(G/T)GTGAG upstream-variant-2KB, reference, missense
rs145731410 Uncertain significance 64,032,946(+) AGATC(A/G)GGGAC upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C20orf204 Gene

Variant ID Type Subtype PubMed ID
dgv7699n54 CNV loss 21841781
esv2758807 CNV gain+loss 17122850
nsv1160691 CNV deletion 26073780
nsv428381 CNV gain+loss 18775914
nsv469773 CNV gain 16826518
nsv470564 CNV gain 18288195
nsv509785 CNV insertion 20534489
nsv586703 CNV loss 21841781
nsv953310 CNV deletion 24416366

Relevant External Links for C20orf204 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf204

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C20orf204 Gene

Disorders for C20orf204 Gene

Relevant External Links for C20orf204

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf204
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf204

No disorders were found for C20orf204 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf204 Gene

Publications for C20orf204 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for C20orf204 Gene

Sources for C20orf204 Gene

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