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Aliases for C20orf203 Gene

Aliases for C20orf203 Gene

  • Chromosome 20 Open Reading Frame 203 2 3
  • Uncharacterized Protein C20orf203 3
  • Alugen 3

External Ids for C20orf203 Gene

Previous GeneCards Identifiers for C20orf203 Gene

  • GC20M031221
  • GC20M028008

Summaries for C20orf203 Gene

GeneCards Summary for C20orf203 Gene

C20orf203 (Chromosome 20 Open Reading Frame 203) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf203 Gene

Genomics for C20orf203 Gene

Genomic Location for C20orf203 Gene

Start:
32,631,625 bp from pter
End:
32,673,941 bp from pter
Size:
42,317 bases
Orientation:
Minus strand

Genomic View for C20orf203 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf203 Gene

No data available for Regulatory Elements for C20orf203 Gene

Proteins for C20orf203 Gene

  • Protein details for C20orf203 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBC4-CT203_HUMAN
    Recommended name:
    Uncharacterized protein C20orf203
    Protein Accession:
    Q8NBC4
    Secondary Accessions:
    • B8JHY2

    Protein attributes for C20orf203 Gene

    Size:
    194 amino acids
    Molecular mass:
    21159 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Originated from non-coding DNA sequences (insertion of repeat elements especially Alu). Seems to exist only in human

neXtProt entry for C20orf203 Gene

Proteomics data for C20orf203 Gene at MOPED

Post-translational modifications for C20orf203 Gene

No Post-translational modifications

Other Protein References for C20orf203 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C20orf203 Gene

Domains for C20orf203 Gene

Protein Domains for C20orf203 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf203: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf203 Gene

Function for C20orf203 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C20orf203 Gene

Localization for C20orf203 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C20orf203 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for C20orf203 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with C20orf203: view

No data available for Subcellular locations from COMPARTMENTS for C20orf203 Gene

Pathways for C20orf203 Gene

SuperPathways for C20orf203 Gene

No Data Available

Interacting Proteins for C20orf203 Gene

Gene Ontology (GO) - Biological Process for C20orf203 Gene

None

No data available for Pathways by source for C20orf203 Gene

Transcripts for C20orf203 Gene

mRNA/cDNA for C20orf203 Gene

(5) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf203 Gene

Chromosome 20 open reading frame 203:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf203

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C20orf203
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf203 Gene

No ASD Table

Relevant External Links for C20orf203 Gene

GeneLoc Exon Structure for
C20orf203
ECgene alternative splicing isoforms for
C20orf203

Expression for C20orf203 Gene

mRNA expression in normal human tissues for C20orf203 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf203 Gene

This gene is overexpressed in Brain - Cerebellum (4.8) and Brain - Cerebellar Hemisphere (4.1).

SOURCE GeneReport for Unigene cluster for C20orf203 Gene Hs.353262

mRNA Expression by UniProt/SwissProt for C20orf203 Gene

Q8NBC4-CT203_HUMAN
Tissue specificity: Expressed most abundantly in the brain at protein level. Present in cortex, cerebellum and midbrain. Found in neurons. Elevated expressions detected in Alzheimer brain samples. Also expressed in testis.
genes like me logo Genes that share expressions with C20orf203: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein expression for C20orf203 Gene

Orthologs for C20orf203 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf203 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf203 35
  • 97.94 (n)
  • 94.85 (a)
Species with no ortholog for C20orf203:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf203 Gene

ENSEMBL:
Gene Tree for C20orf203 (if available)
TreeFam:
Gene Tree for C20orf203 (if available)

Paralogs for C20orf203 Gene

No data available for Paralogs for C20orf203 Gene

Variants for C20orf203 Gene

Sequence variations from dbSNP and Humsavar for C20orf203 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs464063 -- 32,632,005(+) TCTGC(C/T)CCTTG utr-variant-3-prime
rs748640 -- 32,645,138(-) CTCCA(C/T)CCACA intron-variant
rs750401 -- 32,658,836(-) CTAGG(C/G)CTTGA intron-variant
rs750402 -- 32,658,764(-) CTGTA(A/G)CTCCA intron-variant
rs911295 -- 32,649,957(+) AGCAT(A/G)GGCCC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C20orf203 Gene

Variant ID Type Subtype PubMed ID
dgv4562n71 CNV Loss 21882294
nsv523511 CNV Loss 19592680
nsv521347 CNV Gain 19592680
nsv509766 CNV Insertion 20534489
nsv516018 CNV Loss 19592680
nsv470547 CNV Loss 18288195
nsv912839 CNV Loss 21882294
nsv833956 CNV Loss 17160897

Relevant External Links for C20orf203 Gene

HapMap Linkage Disequilibrium report
C20orf203

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf203 Gene

Disorders for C20orf203 Gene

No disorders were found for C20orf203 Gene.

No data available for UniProtKB/Swiss-Prot for C20orf203 Gene

Publications for C20orf203 Gene

  1. A human-specific de novo protein-coding gene associated with human brain functions. (PMID: 20376170) Li C.Y. … Wei L. (PLoS Comput. Biol. 2010) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C20orf203 Gene

Sources for C20orf203 Gene

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