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Aliases for C20orf202 Gene

Aliases for C20orf202 Gene

  • Chromosome 20 Open Reading Frame 202 2 3 5

External Ids for C20orf202 Gene

Previous GeneCards Identifiers for C20orf202 Gene

  • GC20P001134
  • GC20P001184
  • GC20P001135

Summaries for C20orf202 Gene

GeneCards Summary for C20orf202 Gene

C20orf202 (Chromosome 20 Open Reading Frame 202) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf202 Gene

Genomics for C20orf202 Gene

Regulatory Elements for C20orf202 Gene

Enhancers for C20orf202 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F001108 0.7 ENCODE 11.1 -94.8 -94842 0.2 CTCF ZNF48 ZBTB40 RAD21 HBP1 ZKSCAN1 ZBTB48 ZNF143 SMC3 NR2F6 C20orf202 RSPO4 TMEM74B PSMF1 GC20P001101
GH20F001144 0.5 FANTOM5 2 -59.2 -59208 0.2 SCRT2 PSMF1 RSPO4 TMEM74B C20orf202 SCRT2 ACTG1P3 LOC105372493
GH20F001278 0.5 FANTOM5 1.6 +75.1 75114 0.1 PRDM10 RAD21L1 SDCBP2 FKBP1A MIR6869 TMEM74B C20orf202 PIR62557 ENSG00000280162
GH20F001204 0.6 Ensembl 0.8 +0.7 747 0.4 PHF8 RNF2 NRF1 HIC1 ZNF121 ZNF341 ZNF391 NR2F6 SMAD4 ZFX C20orf202 RAD21L1
GH20F001212 1.2 Ensembl ENCODE 0.4 +9.6 9647 0.6 ELF3 ARID4B ZNF2 RAD21 SLC30A9 ZNF143 MIXL1 THAP11 ZNF654 CEBPB C20orf202 RAD21L1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C20orf202 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf202 Gene

Chromosome:
20
Start:
1,203,454 bp from pter
End:
1,208,274 bp from pter
Size:
4,821 bases
Orientation:
Plus strand

Genomic View for C20orf202 Gene

Genes around C20orf202 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf202 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf202 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf202 Gene

Proteins for C20orf202 Gene

  • Protein details for C20orf202 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1L168-CT202_HUMAN
    Recommended name:
    Uncharacterized protein C20orf202
    Protein Accession:
    A1L168

    Protein attributes for C20orf202 Gene

    Size:
    122 amino acids
    Molecular mass:
    13591 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf202 Gene

Post-translational modifications for C20orf202 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf202 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf202 Gene

Domains & Families for C20orf202 Gene

Protein Domains for C20orf202 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf202: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf202 Gene

Function for C20orf202 Gene

Phenotypes for C20orf202 Gene

genes like me logo Genes that share phenotypes with C20orf202: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf202 Gene

Localization for C20orf202 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf202 Gene COMPARTMENTS Subcellular localization image for C20orf202 gene
Compartment Confidence
nucleus 2
cytosol 1
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf202 Gene

Pathways & Interactions for C20orf202 Gene

SuperPathways for C20orf202 Gene

No Data Available

Interacting Proteins for C20orf202 Gene

Gene Ontology (GO) - Biological Process for C20orf202 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf202 Gene

Transcripts for C20orf202 Gene

mRNA/cDNA for C20orf202 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf202 Gene

Chromosome 20 open reading frame 202:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf202 Gene

No ASD Table

Relevant External Links for C20orf202 Gene

GeneLoc Exon Structure for
C20orf202
ECgene alternative splicing isoforms for
C20orf202

Expression for C20orf202 Gene

mRNA expression in normal human tissues for C20orf202 Gene

NURSA nuclear receptor signaling pathways regulating expression of C20orf202 Gene:

C20orf202

SOURCE GeneReport for Unigene cluster for C20orf202 Gene:

Hs.148503
genes like me logo Genes that share expression patterns with C20orf202: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C20orf202 Gene

Orthologs for C20orf202 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C20orf202 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf202 34
  • 99.45 (n)
C20orf202 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C24H20orf202 34
  • 84.33 (n)
cow
(Bos Taurus)
Mammalia C13H20orf202 34
  • 84.18 (n)
mouse
(Mus musculus)
Mammalia Tmem74bos 34 16
  • 76.39 (n)
rat
(Rattus norvegicus)
Mammalia Tmem74bos 34
  • 75.63 (n)
Species where no ortholog for C20orf202 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf202 Gene

ENSEMBL:
Gene Tree for C20orf202 (if available)
TreeFam:
Gene Tree for C20orf202 (if available)

Paralogs for C20orf202 Gene

No data available for Paralogs for C20orf202 Gene

Variants for C20orf202 Gene

Sequence variations from dbSNP and Humsavar for C20orf202 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111605444 -- 1,208,283(+) GGTCT(A/G)ATGAT downstream-variant-500B
rs111877269 -- 1,203,963(+) AGTTT(C/T)CTTAT intron-variant
rs112783655 -- 1,204,013(+) GTATT(A/G)TAAGG intron-variant
rs113128359 -- 1,202,166(+) TGCTT(-/CA)CACGG upstream-variant-2KB
rs113334625 -- 1,205,263(+) ACCAC(A/G)GCTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf202 Gene

Variant ID Type Subtype PubMed ID
nsv1057097 CNV gain 25217958

Variation tolerance for C20orf202 Gene

Gene Damage Index Score: 2.42; 42.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C20orf202 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf202

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf202 Gene

Disorders for C20orf202 Gene

Relevant External Links for C20orf202

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf202

No disorders were found for C20orf202 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf202 Gene

Publications for C20orf202 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C20orf202 Gene

Sources for C20orf202 Gene

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