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Aliases for C20orf197 Gene

Aliases for C20orf197 Gene

  • Chromosome 20 Open Reading Frame 197 2 3

External Ids for C20orf197 Gene

Summaries for C20orf197 Gene

GeneCards Summary for C20orf197 Gene

C20orf197 (Chromosome 20 Open Reading Frame 197) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf197 Gene

Genomics for C20orf197 Gene

Genomic Location for C20orf197 Gene

Start:
60,055,925 bp from pter
End:
60,072,953 bp from pter
Size:
17,029 bases
Orientation:
Plus strand

Genomic View for C20orf197 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf197 Gene

Regulatory Elements for C20orf197 Gene

Proteins for C20orf197 Gene

  • Protein details for C20orf197 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N268-CT197_HUMAN
    Recommended name:
    Uncharacterized protein C20orf197
    Protein Accession:
    Q8N268
    Secondary Accessions:
    • Q08EQ0

    Protein attributes for C20orf197 Gene

    Size:
    126 amino acids
    Molecular mass:
    14459 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf197 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf197 Gene

Proteomics data for C20orf197 Gene at MOPED

Post-translational modifications for C20orf197 Gene

No Post-translational modifications

Other Protein References for C20orf197 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf197 Gene

Domains for C20orf197 Gene

Protein Domains for C20orf197 Gene

ProtoNet:
genes like me logo Genes that share domains with C20orf197: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf197 Gene

Function for C20orf197 Gene

miRNA for C20orf197 Gene

miRTarBase miRNAs that target C20orf197

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf197 Gene

Localization for C20orf197 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf197 Gene COMPARTMENTS Subcellular localization image for C20orf197 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for C20orf197 Gene

Pathways for C20orf197 Gene

SuperPathways for C20orf197 Gene

No Data Available

Interacting Proteins for C20orf197 Gene

Gene Ontology (GO) - Biological Process for C20orf197 Gene

None

No data available for Pathways by source for C20orf197 Gene

Transcripts for C20orf197 Gene

mRNA/cDNA for C20orf197 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf197 Gene

Chromosome 20 open reading frame 197:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf197 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1: -
SP2: - -
SP3: - -
SP4:

Relevant External Links for C20orf197 Gene

GeneLoc Exon Structure for
C20orf197
ECgene alternative splicing isoforms for
C20orf197

Expression for C20orf197 Gene

mRNA expression in normal human tissues for C20orf197 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf197 Gene

This gene is overexpressed in Whole Blood (4.2).

SOURCE GeneReport for Unigene cluster for C20orf197 Gene Hs.335319

genes like me logo Genes that share expressions with C20orf197: view

Orthologs for C20orf197 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf197 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf197 36
  • 99.47 (n)
  • 99.2 (a)
C20orf197 37
  • 99 (a)
OneToOne
Species with no ortholog for C20orf197:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf197 Gene

ENSEMBL:
Gene Tree for C20orf197 (if available)
TreeFam:
Gene Tree for C20orf197 (if available)

Paralogs for C20orf197 Gene

No data available for Paralogs for C20orf197 Gene

Variants for C20orf197 Gene

Sequence variations from dbSNP and Humsavar for C20orf197 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs242792 -- 60,057,665(+) GATCT(C/T)TGGTG intron-variant
rs242793 -- 60,058,718(+) AGCTC(A/G)GGCAG intron-variant
rs242794 -- 60,058,779(+) CTCCC(C/T)GGGGC intron-variant
rs242795 -- 60,059,007(+) GAGGA(A/T)GCCGG intron-variant
rs242796 -- 60,059,800(+) ataga(A/C)aaata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf197 Gene

Variant ID Type Subtype PubMed ID
nsv819951 CNV Gain 19587683
esv2631555 CNV Insertion 19546169
esv269591 CNV Insertion 20981092
esv2559283 CNV Deletion 19546169

Relevant External Links for C20orf197 Gene

HapMap Linkage Disequilibrium report
C20orf197
Human Gene Mutation Database (HGMD)
C20orf197

Disorders for C20orf197 Gene

Relevant External Links for C20orf197

Genetic Association Database (GAD)
C20orf197
genes like me logo Genes that share disorders with C20orf197: view

No data available for UniProtKB/Swiss-Prot for C20orf197 Gene

Publications for C20orf197 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C20orf197 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf197
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf197
    • Block miRNA regulation of C20orf197 using miScript Target Protectors

    Sources for C20orf197 Gene

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