Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C20orf197 Gene

Aliases for C20orf197 Gene

  • Chromosome 20 Open Reading Frame 197 2 3

External Ids for C20orf197 Gene

Previous GeneCards Identifiers for C20orf197 Gene

  • GC20P058065
  • GC20P058630
  • GC20P055418

Summaries for C20orf197 Gene

GeneCards Summary for C20orf197 Gene

C20orf197 (Chromosome 20 Open Reading Frame 197) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf197 Gene

Genomics for C20orf197 Gene

Regulatory Elements for C20orf197 Gene

Genomic Location for C20orf197 Gene

Start:
60,055,925 bp from pter
End:
60,072,953 bp from pter
Size:
17,029 bases
Orientation:
Plus strand

Genomic View for C20orf197 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf197 Gene

Proteins for C20orf197 Gene

  • Protein details for C20orf197 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N268-CT197_HUMAN
    Recommended name:
    Uncharacterized protein C20orf197
    Protein Accession:
    Q8N268
    Secondary Accessions:
    • Q08EQ0

    Protein attributes for C20orf197 Gene

    Size:
    126 amino acids
    Molecular mass:
    14459 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf197 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf197 Gene

Proteomics data for C20orf197 Gene at MOPED

Post-translational modifications for C20orf197 Gene

No Post-translational modifications

Other Protein References for C20orf197 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf197 Gene

Domains for C20orf197 Gene

Protein Domains for C20orf197 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf197: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf197 Gene

Function for C20orf197 Gene

Animal Model Products

CRISPR Products

miRNA for C20orf197 Gene

miRTarBase miRNAs that target C20orf197

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf197
    • Block miRNA regulation of C20orf197 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf197

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf197 Gene

    Localization for C20orf197 Gene

    Subcellular locations from

    COMPARTMENTS
    Jensen Localization Image for C20orf197 Gene COMPARTMENTS Subcellular localization image for C20orf197 gene
    Compartment Confidence
    cytosol 2
    mitochondrion 2
    nucleus 2
    extracellular 1

    No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf197 Gene

    Pathways for C20orf197 Gene

    SuperPathways for C20orf197 Gene

    No Data Available

    Interacting Proteins for C20orf197 Gene

    Gene Ontology (GO) - Biological Process for C20orf197 Gene

    None

    No data available for Pathways by source for C20orf197 Gene

    Transcripts for C20orf197 Gene

    mRNA/cDNA for C20orf197 Gene

    (15) Selected AceView cDNA sequences:
    (5) Additional mRNA sequences :
    (3) REFSEQ mRNAs :
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for C20orf197 Gene

    Chromosome 20 open reading frame 197:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate C20orf197
      • Block miRNA regulation of C20orf197 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for C20orf197

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C20orf197
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for C20orf197 Gene

      ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
      SP1: -
      SP2: - -
      SP3: - -
      SP4:

      Relevant External Links for C20orf197 Gene

      GeneLoc Exon Structure for
      C20orf197
      ECgene alternative splicing isoforms for
      C20orf197

      Expression for C20orf197 Gene

      mRNA expression in normal human tissues for C20orf197 Gene

      mRNA differential expression in normal tissues according to GTEx for C20orf197 Gene

      This gene is overexpressed in Whole Blood (4.2).

      SOURCE GeneReport for Unigene cluster for C20orf197 Gene Hs.335319

      genes like me logo Genes that share expressions with C20orf197: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C20orf197 Gene

      Orthologs for C20orf197 Gene

      This gene was present in the common ancestor of human and chimp.

      Orthologs for C20orf197 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia C20H20orf197 35
      • 99.47 (n)
      • 99.2 (a)
      C20orf197 36
      • 99 (a)
      OneToOne
      Species with no ortholog for C20orf197:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • mouse (Mus musculus)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for C20orf197 Gene

      ENSEMBL:
      Gene Tree for C20orf197 (if available)
      TreeFam:
      Gene Tree for C20orf197 (if available)

      Paralogs for C20orf197 Gene

      No data available for Paralogs for C20orf197 Gene

      Variants for C20orf197 Gene

      Sequence variations from dbSNP and Humsavar for C20orf197 Gene

      SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
      rs242792 -- 60,057,665(+) GATCT(C/T)TGGTG intron-variant
      rs242793 -- 60,058,718(+) AGCTC(A/G)GGCAG intron-variant
      rs242794 -- 60,058,779(+) CTCCC(C/T)GGGGC intron-variant
      rs242795 -- 60,059,007(+) GAGGA(A/T)GCCGG intron-variant
      rs242796 -- 60,059,800(+) ataga(A/C)aaata intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for C20orf197 Gene

      Variant ID Type Subtype PubMed ID
      nsv819951 CNV Gain 19587683
      esv2631555 CNV Insertion 19546169
      esv269591 CNV Insertion 20981092
      esv2559283 CNV Deletion 19546169

      Relevant External Links for C20orf197 Gene

      HapMap Linkage Disequilibrium report
      C20orf197
      Human Gene Mutation Database (HGMD)
      C20orf197

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf197 Gene

      Disorders for C20orf197 Gene

      Relevant External Links for C20orf197

      Genetic Association Database (GAD)
      C20orf197
      genes like me logo Genes that share disorders with C20orf197: view

      No data available for UniProtKB/Swiss-Prot for C20orf197 Gene

      Publications for C20orf197 Gene

      1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3
      2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
      3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
      4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
      5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

      Products for C20orf197 Gene

      Sources for C20orf197 Gene

      Back to Top

      Content