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Aliases for C20orf196 Gene

Aliases for C20orf196 Gene

  • Chromosome 20 Open Reading Frame 196 2 3

External Ids for C20orf196 Gene

Summaries for C20orf196 Gene

GeneCards Summary for C20orf196 Gene

C20orf196 (Chromosome 20 Open Reading Frame 196) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf196 Gene

Genomics for C20orf196 Gene

Genomic Location for C20orf196 Gene

Start:
5,750,393 bp from pter
End:
5,863,912 bp from pter
Size:
113,520 bases
Orientation:
Plus strand

Genomic View for C20orf196 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf196 Gene

Regulatory Elements for C20orf196 Gene

Proteins for C20orf196 Gene

  • Protein details for C20orf196 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYI0-CT196_HUMAN
    Recommended name:
    Uncharacterized protein C20orf196
    Protein Accession:
    Q8IYI0
    Secondary Accessions:
    • A8K9J3
    • Q5TGA9
    • Q96LU1

    Protein attributes for C20orf196 Gene

    Size:
    205 amino acids
    Molecular mass:
    22938 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf196 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf196 Gene

Proteomics data for C20orf196 Gene at MOPED

Post-translational modifications for C20orf196 Gene

No Post-translational modifications

Other Protein References for C20orf196 Gene

No data available for DME Specific Peptides for C20orf196 Gene

Domains for C20orf196 Gene

Protein Domains for C20orf196 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C20orf196: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf196 Gene

Function for C20orf196 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C20orf196 Gene

Localization for C20orf196 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf196 Gene COMPARTMENTS Subcellular localization image for C20orf196 gene
Compartment Confidence
cytosol 2
nucleus 2
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1

No data available for Gene Ontology (GO) - Cellular Components for C20orf196 Gene

Pathways for C20orf196 Gene

SuperPathways for C20orf196 Gene

No Data Available

Interacting Proteins for C20orf196 Gene

Gene Ontology (GO) - Biological Process for C20orf196 Gene

None

No data available for Pathways by source for C20orf196 Gene

Transcripts for C20orf196 Gene

Unigene Clusters for C20orf196 Gene

Chromosome 20 open reading frame 196:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf196 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: - - - - -
SP2: - - - - - -
SP3: - -
SP4: - - - - -
SP5: -
SP6:

Relevant External Links for C20orf196 Gene

GeneLoc Exon Structure for
C20orf196
ECgene alternative splicing isoforms for
C20orf196

Expression for C20orf196 Gene

mRNA expression in normal human tissues for C20orf196 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C20orf196 Gene

SOURCE GeneReport for Unigene cluster for C20orf196 Gene Hs.529340

genes like me logo Genes that share expressions with C20orf196: view

Orthologs for C20orf196 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf196 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf196 36
  • 97.72 (n)
  • 97.07 (a)
C20orf196 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf196 36
  • 83.33 (n)
  • 75 (a)
C20orf196 37
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20orf196 37
  • 76 (a)
OneToOne
C24H20orf196 36
  • 83.09 (n)
  • 76.1 (a)
mouse
(Mus musculus)
Mammalia 1110034G24Rik 36
  • 75 (n)
  • 62.75 (a)
1110034G24Rik 16
1110034G24Rik 37
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf196 37
  • 52 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC681292 36
  • 78.91 (n)
  • 68.03 (a)
chicken
(Gallus gallus)
Aves C3H20orf196 36
  • 50.17 (n)
  • 35.5 (a)
Species with no ortholog for C20orf196:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf196 Gene

ENSEMBL:
Gene Tree for C20orf196 (if available)
TreeFam:
Gene Tree for C20orf196 (if available)

Paralogs for C20orf196 Gene

Pseudogenes.org Pseudogenes for C20orf196 Gene

genes like me logo Genes that share paralogs with C20orf196: view

No data available for Paralogs for C20orf196 Gene

Variants for C20orf196 Gene

Sequence variations from dbSNP and Humsavar for C20orf196 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs171059 -- 5,810,055(+) AGTTC(G/T)AGACC intron-variant
rs173162 -- 5,771,678(-) gagat(C/T)gcacc intron-variant
rs182923 -- 5,834,833(-) GAAGT(A/G)GTCTT intron-variant
rs183543 -- 5,814,078(+) ctcca(A/G)agtgg intron-variant
rs189334 -- 5,812,812(+) agggt(C/T)gggga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf196 Gene

Variant ID Type Subtype PubMed ID
nsv912637 CNV Gain 21882294
esv34186 CNV Loss 18971310
nsv3270 CNV Insertion 18451855
nsv833905 CNV Gain 17160897
nsv3271 CNV Insertion 18451855
nsv470539 CNV Gain 18288195
dgv777e199 CNV Deletion 23128226
esv27527 CNV Loss 19812545
nsv523886 CNV Loss 19592680

Relevant External Links for C20orf196 Gene

HapMap Linkage Disequilibrium report
C20orf196

Disorders for C20orf196 Gene

Relevant External Links for C20orf196

Genetic Association Database (GAD)
C20orf196
genes like me logo Genes that share disorders with C20orf196: view

No data available for UniProtKB/Swiss-Prot for C20orf196 Gene

Publications for C20orf196 Gene

  1. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 3 49
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3

Products for C20orf196 Gene

Sources for C20orf196 Gene

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