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Aliases for C20orf196 Gene

Aliases for C20orf196 Gene

  • Chromosome 20 Open Reading Frame 196 2 3 5

External Ids for C20orf196 Gene

Previous GeneCards Identifiers for C20orf196 Gene

  • GC20P005680

Summaries for C20orf196 Gene

GeneCards Summary for C20orf196 Gene

C20orf196 (Chromosome 20 Open Reading Frame 196) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf196 Gene

Genomics for C20orf196 Gene

Regulatory Elements for C20orf196 Gene

Enhancers for C20orf196 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C20orf196 on UCSC Golden Path with GeneCards custom track

Promoters for C20orf196 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C20orf196 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf196 Gene

Chromosome:
20
Start:
5,750,335 bp from pter
End:
5,864,407 bp from pter
Size:
114,073 bases
Orientation:
Plus strand

Genomic View for C20orf196 Gene

Genes around C20orf196 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf196 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf196 Gene

Proteins for C20orf196 Gene

  • Protein details for C20orf196 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYI0-CT196_HUMAN
    Recommended name:
    Uncharacterized protein C20orf196
    Protein Accession:
    Q8IYI0
    Secondary Accessions:
    • A8K9J3
    • Q5TGA9
    • Q96LU1

    Protein attributes for C20orf196 Gene

    Size:
    205 amino acids
    Molecular mass:
    22938 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C20orf196 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C20orf196 Gene

Proteomics data for C20orf196 Gene at MOPED

Post-translational modifications for C20orf196 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf196 Gene

No data available for DME Specific Peptides for C20orf196 Gene

Domains & Families for C20orf196 Gene

Protein Domains for C20orf196 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf196: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf196 Gene

Function for C20orf196 Gene

Phenotypes for C20orf196 Gene

genes like me logo Genes that share phenotypes with C20orf196: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C20orf196 Gene

Localization for C20orf196 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf196 Gene COMPARTMENTS Subcellular localization image for C20orf196 gene
Compartment Confidence
cytosol 2
endoplasmic reticulum 2
golgi apparatus 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf196 Gene

Pathways & Interactions for C20orf196 Gene

SuperPathways for C20orf196 Gene

No Data Available

Interacting Proteins for C20orf196 Gene

Gene Ontology (GO) - Biological Process for C20orf196 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf196 Gene

Drugs & Compounds for C20orf196 Gene

No Compound Related Data Available

Transcripts for C20orf196 Gene

Unigene Clusters for C20orf196 Gene

Chromosome 20 open reading frame 196:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf196 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: - - - - -
SP2: - - - - - -
SP3: - -
SP4: - - - - -
SP5: -
SP6:

Relevant External Links for C20orf196 Gene

GeneLoc Exon Structure for
C20orf196
ECgene alternative splicing isoforms for
C20orf196

Expression for C20orf196 Gene

mRNA expression in normal human tissues for C20orf196 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C20orf196 Gene



SOURCE GeneReport for Unigene cluster for C20orf196 Gene Hs.529340

genes like me logo Genes that share expression patterns with C20orf196: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C20orf196 Gene

Orthologs for C20orf196 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf196 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C13H20orf196 35
  • 83.33 (n)
  • 75 (a)
C20orf196 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C24H20orf196 35
  • 83.09 (n)
  • 76.1 (a)
C20orf196 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1110034G24Rik 35
  • 75 (n)
  • 62.75 (a)
1110034G24Rik 16
1110034G24Rik 36
  • 62 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf196 35
  • 97.72 (n)
  • 97.07 (a)
C20orf196 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC681292 35
  • 78.91 (n)
  • 68.03 (a)
oppossum
(Monodelphis domestica)
Mammalia C20orf196 36
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves C3H20orf196 35
  • 50.17 (n)
  • 35.5 (a)
Species with no ortholog for C20orf196:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf196 Gene

ENSEMBL:
Gene Tree for C20orf196 (if available)
TreeFam:
Gene Tree for C20orf196 (if available)

Paralogs for C20orf196 Gene

Pseudogenes.org Pseudogenes for C20orf196 Gene

genes like me logo Genes that share paralogs with C20orf196: view

No data available for Paralogs for C20orf196 Gene

Variants for C20orf196 Gene

Sequence variations from dbSNP and Humsavar for C20orf196 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs237422 - 5,772,933(-) CACAC(A/G)CTGAT reference, missense, utr-variant-5-prime
rs171059 -- 5,810,055(+) AGTTC(G/T)AGACC intron-variant
rs173162 -- 5,771,678(-) gagat(C/T)gcacc intron-variant
rs183543 -- 5,814,078(+) ctcca(A/G)agtgg intron-variant
rs189334 -- 5,812,812(+) agggt(C/T)gggga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf196 Gene

Variant ID Type Subtype PubMed ID
nsv912637 CNV Gain 21882294
esv34186 CNV Loss 18971310
nsv3270 CNV Insertion 18451855
nsv833905 CNV Gain 17160897
nsv3271 CNV Insertion 18451855
nsv470539 CNV Gain 18288195
dgv777e199 CNV Deletion 23128226
esv27527 CNV Loss 19812545
nsv523886 CNV Loss 19592680

Variation tolerance for C20orf196 Gene

Residual Variation Intolerance Score: 63.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.45; 43.08% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C20orf196 Gene

Disorders for C20orf196 Gene

Relevant External Links for C20orf196

Genetic Association Database (GAD)
C20orf196
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf196

No disorders were found for C20orf196 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf196 Gene

Publications for C20orf196 Gene

  1. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M. … Deary I.J. (Biol Psychol 2011) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3
  4. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3

Products for C20orf196 Gene

Sources for C20orf196 Gene

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