Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C20orf195 Gene

Aliases for C20orf195 Gene

  • Chromosome 20 Open Reading Frame 195 2 3 5

External Ids for C20orf195 Gene

Previous GeneCards Identifiers for C20orf195 Gene

  • GC20P061655
  • GC20P062184
  • GC20P058914

Summaries for C20orf195 Gene

GeneCards Summary for C20orf195 Gene

C20orf195 (Chromosome 20 Open Reading Frame 195) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf195 Gene

Genomics for C20orf195 Gene

Regulatory Elements for C20orf195 Gene

Enhancers for C20orf195 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C20orf195 on UCSC Golden Path with GeneCards custom track

Genomic Location for C20orf195 Gene

Chromosome:
20
Start:
63,547,891 bp from pter
End:
63,556,708 bp from pter
Size:
8,818 bases
Orientation:
Plus strand

Genomic View for C20orf195 Gene

Genes around C20orf195 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf195 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf195 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf195 Gene

Proteins for C20orf195 Gene

  • Protein details for C20orf195 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVV2-CT195_HUMAN
    Recommended name:
    Uncharacterized protein C20orf195
    Protein Accession:
    Q9BVV2

    Protein attributes for C20orf195 Gene

    Size:
    318 amino acids
    Molecular mass:
    36526 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf195 Gene

Proteomics data for C20orf195 Gene at MOPED

Post-translational modifications for C20orf195 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf195 Gene

No data available for DME Specific Peptides for C20orf195 Gene

Domains & Families for C20orf195 Gene

Protein Domains for C20orf195 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9BVV2

UniProtKB/Swiss-Prot:

CT195_HUMAN :
  • Contains 1 fibronectin type-III domain.
Domain:
  • Contains 1 fibronectin type-III domain.
genes like me logo Genes that share domains with C20orf195: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for C20orf195 Gene

Function for C20orf195 Gene

genes like me logo Genes that share phenotypes with C20orf195: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf195 Gene

Localization for C20orf195 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf195 Gene COMPARTMENTS Subcellular localization image for C20orf195 gene
Compartment Confidence
extracellular 5
cytosol 3
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf195 Gene

Pathways & Interactions for C20orf195 Gene

SuperPathways for C20orf195 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C20orf195 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf195 Gene

Drugs & Compounds for C20orf195 Gene

No Compound Related Data Available

Transcripts for C20orf195 Gene

Unigene Clusters for C20orf195 Gene

Chromosome 20 open reading frame 195:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf195 Gene

No ASD Table

Relevant External Links for C20orf195 Gene

GeneLoc Exon Structure for
C20orf195
ECgene alternative splicing isoforms for
C20orf195

Expression for C20orf195 Gene

mRNA expression in normal human tissues for C20orf195 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf195 Gene

This gene is overexpressed in Testis (x44.6).

Protein differential expression in normal tissues from HIPED for C20orf195 Gene

This gene is overexpressed in Tlymphocyte (49.5) and Blymphocyte (18.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C20orf195 Gene



SOURCE GeneReport for Unigene cluster for C20orf195 Gene Hs.197755

genes like me logo Genes that share expression patterns with C20orf195: view

Protein tissue co-expression partners for C20orf195 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C20orf195 Gene

Orthologs for C20orf195 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf195 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C13H20orf195 35
  • 86.14 (n)
  • 82.86 (a)
C20orf195 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C24H20orf195 35
  • 86.35 (n)
  • 81.9 (a)
C20orf195 36
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC051628 35
  • 83.07 (n)
  • 82.43 (a)
BC051628 16
BC051628 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf195 35
  • 98.64 (n)
  • 99.06 (a)
C20orf195 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1564340 35
  • 82.33 (n)
  • 81.27 (a)
chicken
(Gallus gallus)
Aves C20H20ORF195 35
  • 57.38 (n)
  • 48.66 (a)
C20orf195 36
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C20orf195 36
  • 56 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2493 35
Species with no ortholog for C20orf195:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf195 Gene

ENSEMBL:
Gene Tree for C20orf195 (if available)
TreeFam:
Gene Tree for C20orf195 (if available)

Paralogs for C20orf195 Gene

No data available for Paralogs for C20orf195 Gene

Variants for C20orf195 Gene

Sequence variations from dbSNP and Humsavar for C20orf195 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs969635 -- 63,555,148(-) CTGGC(C/T)GGTCA intron-variant, utr-variant-5-prime
rs734750 -- 63,556,086(+) CTGGA(C/T)GCCCT reference, synonymous-codon
rs734751 -- 63,556,164(+) GTGTC(A/G)GCCGT reference, synonymous-codon
rs1122187 -- 63,554,916(-) GCACC(A/G)GCTGA intron-variant, utr-variant-5-prime
rs310610 -- 63,551,449(-) aatca(C/T)gccag upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C20orf195 Gene

Variant ID Type Subtype PubMed ID
nsv9825 CNV Gain 18304495
dgv4618n71 CNV Loss 21882294
dgv4631n71 CNV Loss 21882294
nsv913190 CNV Loss 21882294
dgv4633n71 CNV Loss 21882294
nsv834033 CNV Gain 17160897
dgv4634n71 CNV Loss 21882294
dgv4635n71 CNV Gain+Loss 21882294
nsv834034 CNV Loss 17160897
nsv913207 CNV Loss 21882294
dgv1344e1 CNV Complex 17122850
dgv4637n71 CNV Loss 21882294
nsv913213 CNV Loss 21882294
nsv470563 CNV Loss 18288195
nsv913220 CNV Loss 21882294
dgv4640n71 CNV Loss 21882294
dgv4641n71 CNV Loss 21882294
dgv4642n71 CNV Loss 21882294
dgv521n27 CNV Loss 19166990
nsv521734 CNV Loss 19592680
dgv522n27 CNV Loss 19166990
dgv4643n71 CNV Loss 21882294
nsv913230 CNV Gain+Loss 21882294
dgv35n64 CNV Loss 17921354
nsv517702 CNV Loss 19592680
dgv4644n71 CNV Loss 21882294
esv2722935 CNV Deletion 23290073

Variation tolerance for C20orf195 Gene

Residual Variation Intolerance Score: 15.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.36; 26.81% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C20orf195 Gene

Disorders for C20orf195 Gene

Relevant External Links for C20orf195

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C20orf195

No disorders were found for C20orf195 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf195 Gene

Publications for C20orf195 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3

Products for C20orf195 Gene

Sources for C20orf195 Gene

Content