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Aliases for C20orf194 Gene

Aliases for C20orf194 Gene

  • Chromosome 20 Open Reading Frame 194 2 3

External Ids for C20orf194 Gene

Summaries for C20orf194 Gene

Entrez Gene Summary for C20orf194 Gene

  • This gene encodes an uncharacterized protein with a C-terminal coiled-coil region. The gene is located on chromosome 20p13 in a 1.8 Mb region linked to a spinocerebellar ataxia phenotype, but this gene does not appear to be a disease candidate. [provided by RefSeq, Dec 2011]

GeneCards Summary for C20orf194 Gene

C20orf194 (Chromosome 20 Open Reading Frame 194) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C20orf194 Gene

  • May act as an effector for ARL3

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf194 Gene

Genomics for C20orf194 Gene

Genomic Location for C20orf194 Gene

Start:
3,249,302 bp from pter
End:
3,407,662 bp from pter
Size:
158,361 bases
Orientation:
Minus strand

Genomic View for C20orf194 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C20orf194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf194 Gene

Regulatory Elements for C20orf194 Gene

Proteins for C20orf194 Gene

  • Protein details for C20orf194 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TEA3-CT194_HUMAN
    Recommended name:
    Uncharacterized protein C20orf194
    Protein Accession:
    Q5TEA3
    Secondary Accessions:
    • Q66K86
    • Q6P2R9
    • Q9UFX9

    Protein attributes for C20orf194 Gene

    Size:
    1177 amino acids
    Molecular mass:
    132287 Da
    Quaternary structure:
    • Interacts with ARL3.

neXtProt entry for C20orf194 Gene

Proteomics data for C20orf194 Gene at MOPED

Post-translational modifications for C20orf194 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf194 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf194 Gene

Domains for C20orf194 Gene

Protein Domains for C20orf194 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C20orf194 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf194: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C20orf194 Gene

Function for C20orf194 Gene

Molecular function for C20orf194 Gene

UniProtKB/Swiss-Prot Function: May act as an effector for ARL3

miRNA for C20orf194 Gene

miRTarBase miRNAs that target C20orf194

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C20orf194 Gene

Localization for C20orf194 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C20orf194 Gene COMPARTMENTS Subcellular localization image for C20orf194 gene
Compartment Confidence
nucleus 3
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C20orf194 Gene

Pathways for C20orf194 Gene

SuperPathways for C20orf194 Gene

No Data Available

Interacting Proteins for C20orf194 Gene

Gene Ontology (GO) - Biological Process for C20orf194 Gene

None

No data available for Pathways by source for C20orf194 Gene

Transcripts for C20orf194 Gene

Unigene Clusters for C20orf194 Gene

Chromosome 20 open reading frame 194:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf194 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23 ^ 24 ^
SP1: - -
SP2:
SP3: - -
SP4: -

ExUns: 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34
SP1:
SP2:
SP3:
SP4:

Relevant External Links for C20orf194 Gene

GeneLoc Exon Structure for
C20orf194
ECgene alternative splicing isoforms for
C20orf194

Expression for C20orf194 Gene

mRNA expression in normal human tissues for C20orf194 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C20orf194 Gene

SOURCE GeneReport for Unigene cluster for C20orf194 Gene Hs.516853

genes like me logo Genes that share expressions with C20orf194: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C20orf194 Gene

Orthologs for C20orf194 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C20orf194 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf194 35
  • 98.58 (n)
  • 98.47 (a)
C20orf194 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf194 35
  • 90.85 (n)
  • 90.91 (a)
C13H20orf194 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20orf194 36
  • 92 (a)
OneToOne
C24H20orf194 35
  • 92.24 (n)
  • 92.35 (a)
mouse
(Mus musculus)
Mammalia 4930402H24Rik 35
  • 86.64 (n)
  • 85.19 (a)
4930402H24Rik 16
4930402H24Rik 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf194 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 75 (a)
OneToMany
-- 36
  • 70 (a)
OneToMany
-- 36
  • 84 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
-- 36
  • 80 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1565616 35
  • 87.09 (n)
  • 86.55 (a)
chicken
(Gallus gallus)
Aves C20orf194 36
  • 76 (a)
OneToOne
C4H20ORF194 35
  • 74.71 (n)
  • 76.98 (a)
lizard
(Anolis carolinensis)
Reptilia C20orf194 36
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486685 35
  • 67.16 (n)
  • 66.2 (a)
zebrafish
(Danio rerio)
Actinopterygii C13H20orf194 36
  • 52 (a)
OneToOne
si:ch211-194c3.5 35
  • 59.32 (n)
  • 53.7 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
OneToMany
CSA.3345 36
  • 32 (a)
OneToMany
Species with no ortholog for C20orf194:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C20orf194 Gene

ENSEMBL:
Gene Tree for C20orf194 (if available)
TreeFam:
Gene Tree for C20orf194 (if available)

Paralogs for C20orf194 Gene

No data available for Paralogs for C20orf194 Gene

Variants for C20orf194 Gene

Sequence variations from dbSNP and Humsavar for C20orf194 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs1207 -- 3,250,488(+) CTTCA(C/T)GTTTT utr-variant-3-prime, nc-transcript-variant
rs3310 -- 3,256,586(+) TCTGG(C/T)TTGGC intron-variant
rs8774 -- 3,251,453(-) TTGGT(G/T)TGGGG utr-variant-3-prime, nc-transcript-variant
rs239479 -- 3,404,178(+) gtgcc(C/T)gccac intron-variant
rs239480 -- 3,402,750(+) ttttt(C/G)ttttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf194 Gene

Variant ID Type Subtype PubMed ID
nsv833898 CNV Gain+Loss 17160897
dgv4520n71 CNV Loss 21882294
esv2722118 CNV Deletion 23290073
nsv179045 CNV Loss 16902084
esv2660318 CNV Deletion 23128226
esv269444 CNV Insertion 20981092
esv24766 CNV Loss 19812545
esv2671132 CNV Deletion 23128226
esv2675063 CNV Deletion 23128226
esv2722119 CNV Deletion 23290073

Relevant External Links for C20orf194 Gene

HapMap Linkage Disequilibrium report
C20orf194

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf194 Gene

Disorders for C20orf194 Gene

Relevant External Links for C20orf194

Genetic Association Database (GAD)
C20orf194
Human Genome Epidemiology (HuGE) Navigator
C20orf194
genes like me logo Genes that share disorders with C20orf194: view

No data available for UniProtKB/Swiss-Prot for C20orf194 Gene

Publications for C20orf194 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Expansion of intronic GGCCTG hexanucleotide repeat in NOP56 causes SCA36, a type of spinocerebellar ataxia accompanied by motor neuron involvement. (PMID: 21683323) Kobayashi H. … Koizumi A. (Am. J. Hum. Genet. 2011) 3 4
  4. Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients. (PMID: 21703177) Thompson A.J. … Muir A.J. (J. Hepatol. 2012) 3 48
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for C20orf194 Gene

Sources for C20orf194 Gene

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